View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_20 (Length: 350)
Name: NF21107_low_20
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 33983618 - 33983825
Alignment:
| Q |
21 |
aatacttgtttatgtaagttgctctagtattatagtatataattacaattcttttgcaatcttttgtataactacatgatttgtattagctattctcaat |
120 |
Q |
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| T |
33983618 |
aatacttgtttatgtaagtttctctagtattgtagtatataattacaattcttttgcaatcttttgtataactacatgatttgtattagctattctcaat |
33983717 |
T |
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| Q |
121 |
caataaattcaa--annnnnnnnnnnnaattttctcattctatagannnnnnnacatgataataaagctagtaaatccttctatatggttctccaactct |
218 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33983718 |
caataaattcaatttttttttttttttaattttctcattctatagatttttttacatgataataaagctagtaaatccttctatatggttctccaactct |
33983817 |
T |
|
| Q |
219 |
taaaaagc |
226 |
Q |
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|||||||| |
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| T |
33983818 |
taaaaagc |
33983825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 33983870 - 33983948
Alignment:
| Q |
270 |
gagttcttcaatcatagataaaatttggcaaaaagttgtcgatcctccaaacttgtcaaacatggtctgtgctgctcct |
348 |
Q |
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| T |
33983870 |
gagttcttcaatcatagatcaaatttggcaaaaagttgtcgatcctccaaacttgtcaaacatggtctttgttgctcct |
33983948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 33953976 - 33954026
Alignment:
| Q |
82 |
ttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
132 |
Q |
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| T |
33953976 |
ttttgtataaatacatgatttgtattagctattctcaatcaataaattcaa |
33954026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 33961279 - 33961331
Alignment:
| Q |
80 |
tcttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
132 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
33961279 |
tcttttgtataaatacatgatttgtattagctattctcaatcaatatattcaa |
33961331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 33976574 - 33976626
Alignment:
| Q |
80 |
tcttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
132 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
33976574 |
tcttttgtataaatacatgatttgtattagctattctcaatcaatatattcaa |
33976626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 33993496 - 33993546
Alignment:
| Q |
82 |
ttttgtataactacatgatttgtattagctattctcaatcaataaattcaa |
132 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
33993496 |
ttttgtataaatacatgatttgtattagctattctcaatcaatatattcaa |
33993546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 8275406 - 8275358
Alignment:
| Q |
40 |
tgctctagtattatagtatataattacaattcttttgcaatcttttgta |
88 |
Q |
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||||||||||||||||||||||| || |||||||||| ||||||||||| |
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| T |
8275406 |
tgctctagtattatagtatataactaaaattcttttgtaatcttttgta |
8275358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 8275354 - 8275309
Alignment:
| Q |
80 |
tcttttgtataactacatgatttgtattagctattctcaatcaata |
125 |
Q |
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|||||||||||| | |||||||||||||||||||||| |||||||| |
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| T |
8275354 |
tcttttgtataaatgcatgatttgtattagctattcttaatcaata |
8275309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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