View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_27 (Length: 297)
Name: NF21107_low_27
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 108 - 297
Target Start/End: Complemental strand, 24221262 - 24221072
Alignment:
| Q |
108 |
tacagaccagagttaaatgtagagtctttaatcaacttgatcatttggagaaggtttgcaaaaacaaaagaa-ccaataggaataacaacccagagttgt |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
24221262 |
tacagaccagagtcaaatgtagagtctttaatcaacttgatcatttggagaaggtttgcaaaaacaaaagaaaccaataggaataacaacctagagttgt |
24221163 |
T |
|
| Q |
207 |
tgagcctcacaaagaagatgaggaacaattgtttaaggctttgctattcatctaggagtagcaaaggaacatggctaatagatatttgatg |
297 |
Q |
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|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
24221162 |
tgagccgcaccaagaagaggaggaacaattgtttaaggctttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatg |
24221072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 24222041 - 24221941
Alignment:
| Q |
14 |
agacaaaaggcaaaacttcaatagttttgagaaaaagaagttttcgccctcccacattgcaaaaaagatacttattttgaaaaatttatattggtacaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
24222041 |
agacaaaaggcaaaacttcaatagttttgagaaaaagaagttttcgccctcccacattgcaaaaaagatacttattttgaaaaagttttattggtacaga |
24221942 |
T |
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| Q |
114 |
c |
114 |
Q |
| |
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| |
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| T |
24221941 |
c |
24221941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 290
Target Start/End: Original strand, 44733011 - 44733269
Alignment:
| Q |
36 |
agttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtc |
133 |
Q |
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| T |
44733011 |
agttttggggaaaagaagtttccgccgtgtccacattgcaaaaaggatactcatttagacaagttt-tgttggtataggccaggagttaaatgtagagct |
44733109 |
T |
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| Q |
134 |
tttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaac |
232 |
Q |
| |
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| ||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||| ||||| || | |||||||||| ||| ||||||||||||| | |
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| T |
44733110 |
tgtaaccaacttggtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaacaagcccgtgttgttgagcaccaccaagaagatgaggagc |
44733209 |
T |
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| Q |
233 |
aattgtttaaggct--ttgctattcatctaggagtagcaaaggaacatggctaatagata |
290 |
Q |
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|||||||||||||| |||||||| | | | |||||||||| ||||||||||||||||| |
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|
| T |
44733210 |
aattgtttaaggcttcttgctatttagcatgtagtagcaaagaaacatggctaatagata |
44733269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 290
Target Start/End: Original strand, 32799174 - 32799432
Alignment:
| Q |
36 |
agttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtc |
133 |
Q |
| |
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||||||| ||||||||||||| | || | |||||||||||||| |||||| |||| || || ||| | |||||| || |||| |||||||||||||| |
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| T |
32799174 |
agttttgggaaaaagaagtttccaccgtgtccacattgcaaaaaggatactcatttagacaagttt-tgttggtataggccaggagttaaatgtagagct |
32799272 |
T |
|
| Q |
134 |
tttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaac |
232 |
Q |
| |
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| ||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||| || || || |||||||||||| ||| ||||||||||||| | |
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| T |
32799273 |
tgtaaccaacttggtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaagaagcccgagttgttgagcaccaccaagaagatgaggagc |
32799372 |
T |
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| Q |
233 |
aattgtttaaggct--ttgctattcatctaggagtagcaaaggaacatggctaatagata |
290 |
Q |
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|||||||||||||| |||||||| | | | |||||||||| ||||||||||||||||| |
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| T |
32799373 |
aattgtttaaggcttcttgctatttagcatgtagtagcaaagaaacatggctaatagata |
32799432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 290
Target Start/End: Original strand, 45337427 - 45337685
Alignment:
| Q |
36 |
agttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtc |
133 |
Q |
| |
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||||||| ||||||||||||| | || | |||||||||||||| |||||| |||| || || ||| | |||||| || |||| |||||||||||||| |
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| T |
45337427 |
agttttgggaaaaagaagtttccaccgtgtccacattgcaaaaaggatactcatttagacaagttt-tgttggtataggccaggagttaaatgtagagct |
45337525 |
T |
|
| Q |
134 |
tttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaac |
232 |
Q |
| |
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| ||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||| || || || |||||||||||| ||| ||||||||||||| | |
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| T |
45337526 |
tgtaaccaacttggtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaagaagcccgagttgttgagcaccaccaagaagatgaggagc |
45337625 |
T |
|
| Q |
233 |
aattgtttaaggct--ttgctattcatctaggagtagcaaaggaacatggctaatagata |
290 |
Q |
| |
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|||||||||||||| |||||||| | | | |||||||||| ||||||||||||||||| |
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| T |
45337626 |
aattgtttaaggcttcttgctatttagcatgtagtagcaaagaaacatggctaatagata |
45337685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 13110127 - 13109870
Alignment:
| Q |
37 |
gttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtct |
134 |
Q |
| |
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|||||| ||||| ||||||||| |||| |||||||| |||||||||| | |||| || || ||| | |||||||| |||| ||||||||||||||| | |
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| T |
13110127 |
gttttgggaaaatgaagttttcaccctgtccacattgtaaaaaagatattcatttagataagttt-tgttggtacatgccaggagttaaatgtagagttt |
13110029 |
T |
|
| Q |
135 |
ttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaaca |
233 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||| ||| ||||||||||||| || |
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| T |
13110028 |
gtaatcaacttagtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaacaagcccgagttgttgagcaccaccaagaagatgaggagca |
13109929 |
T |
|
| Q |
234 |
attgtttaaggct--ttgctattcatctaggagtagcaaaggaacatggctaatagata |
290 |
Q |
| |
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||||||||||| | |||||||| | | | |||||||||| |||||||||||| |||| |
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|
| T |
13109928 |
attgtttaaggtttcttgctatttagcatgtagtagcaaagaaacatggctaattgata |
13109870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 290
Target Start/End: Complemental strand, 48026393 - 48026137
Alignment:
| Q |
38 |
ttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccaga-gttaaatgtagagtctt |
135 |
Q |
| |
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||||| ||||||||||||| | |||| ||||||||||||||||||||| |||| || || ||| |||||||||| ||| | ||| ||||||||| | |
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| T |
48026393 |
ttttgggaaaaagaagtttccaccctgtccacattgcaaaaaagatactcatttagacaagttt-tattggtacatgccacaagtttaatgtagagcttg |
48026295 |
T |
|
| Q |
136 |
taatcaacttgatcatttggagaaggtttgcaaaaacaaaagaa-ccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaacaa |
234 |
Q |
| |
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||| |||||| |||||||||||| |||||||||||||||| || ||| |||||| ||||| || ||||| ||||| ||| ||||||||||||| ||| |
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|
| T |
48026294 |
taaccaactttgtcatttggagaaagtttgcaaaaacaaaacaaaccagtaggaacaacaagcccgagttcttgagtagcaccaagaagatgaggagcaa |
48026195 |
T |
|
| Q |
235 |
ttgtttaaggc--tttgctattcatctaggagtagcaaaggaacatggctaatagata |
290 |
Q |
| |
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||||||||||| |||||| || | | | |||||||||| ||||||||||||||||| |
|
|
| T |
48026194 |
ttgtttaaggctttttgctgtttagcatgtagtagcaaagaaacatggctaatagata |
48026137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 8402684 - 8402553
Alignment:
| Q |
117 |
gagttaaatgtagagtctttaatcaacttgatcatttggagaaggtttgcaaaaacaaaagaa-ccaataggaataacaacccagagttgttgagcctca |
215 |
Q |
| |
|
|||| |||||||||| | ||| ||||||| |||||| ||||| |||||||||||||||| || ||| |||||| ||||| || |||||||||||| || |
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| T |
8402684 |
gagtaaaatgtagagcttgtaaccaacttgttcatttagagaatgtttgcaaaaacaaaacaaaccagtaggaacaacaagcccgagttgttgagcacca |
8402585 |
T |
|
| Q |
216 |
caaagaagatgaggaacaattgtttaaggctt |
247 |
Q |
| |
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| ||||||||||||| |||||||||| ||||| |
|
|
| T |
8402584 |
ccaagaagatgaggagcaattgtttatggctt |
8402553 |
T |
|
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