View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_low_28 (Length: 284)

Name: NF21107_low_28
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_low_28
NF21107_low_28
[»] chr8 (12 HSPs)
chr8 (1-271)||(38850414-38850685)
chr8 (153-271)||(38827458-38827576)
chr8 (153-254)||(38847053-38847154)
chr8 (155-257)||(38858992-38859094)
chr8 (153-257)||(38861875-38861979)
chr8 (160-257)||(38865306-38865403)
chr8 (155-272)||(38841242-38841359)
chr8 (3-133)||(38859137-38859259)
chr8 (1-52)||(38862083-38862134)
chr8 (84-140)||(38827599-38827655)
chr8 (8-52)||(38841463-38841507)
chr8 (1-52)||(38865520-38865572)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 38850414 - 38850685
Alignment:
Q  1 ttataataatagttaaattcaaactttaataaaagcaagataccatatcctatatcatattctataaactaacctatatatagtatagtcctctatctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38850414 ttataataatagttaaattcaaactttaataaaagcaagataccatatcctatatcatattatataaactaacctatatatagtatagtcctctatctta 38850513  T
Q  101 gataacataccaacaaccctcaagctctaattaactaactcaac-nnnnnnnncaatgtatgcttctacttcttttacttcaccactcctccatgagctt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||||| |||||||||| || ||||||| ||||||||||||||||    
T  38850514 gataacataccaacaaccctcaagctctaattaactaactcaacaaaaaaaaacaatgtatacttctacttccttaacttcacaactcctccatgagctt 38850613  T
Q  200 cttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcaccaaccagctcccct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38850614 cttgtagaatcacacacaagaaggttactcttccaaaatccaattgattttcaatcaccaaccagctcccct 38850685  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 38827576 - 38827458
Alignment:
Q  153 caatgtatgcttctacttcttttacttcaccactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatca 252  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38827576 caatgtatgcttctacttcttttacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatca 38827477  T
Q  253 atcaccaaccagctcccct 271  Q
    |||||||||||||||||||    
T  38827476 atcaccaaccagctcccct 38827458  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 38847154 - 38847053
Alignment:
Q  153 caatgtatgcttctacttcttttacttcaccactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatca 252  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  38847154 caatgtatgcttctacttcttttacttcacaactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaacccagttgatcatca 38847055  T
Q  253 at 254  Q
    ||    
T  38847054 at 38847053  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 38859094 - 38858992
Alignment:
Q  155 atgtatgcttctacttcttttacttcaccactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaat 254  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| | ||||| ||| ||||| ||||||    
T  38859094 atgtatgcttctacttcttttacttcaccacttctacatgagcttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatcaat 38858995  T
Q  255 cac 257  Q
    |||    
T  38858994 cac 38858992  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 38861979 - 38861875
Alignment:
Q  153 caatgtatgcttctacttcttttacttcaccactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatca 252  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| | ||||| ||| ||||| ||||    
T  38861979 caatgtatgcttctacttcctttacttcaccacttctccatgaacttcttgtggaatctcacacaagaaggttactcattcaaaacccagttgatcatca 38861880  T
Q  253 atcac 257  Q
    |||||    
T  38861879 atcac 38861875  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 38865403 - 38865306
Alignment:
Q  160 tgcttctacttcttttacttcaccactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaatcac 257  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||||||  |||||||||    
T  38865403 tgcttctacttcctttacttcacaactcgtccatgagcttcttgtggaatctcacacaagaaggttactctttcaagacccaattgaacatcaatcac 38865306  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 38841359 - 38841242
Alignment:
Q  155 atgtatgcttctacttcttttacttcaccactcctccatgagcttcttgtagaatcacacacaagaaggttactcttccaaaatccaattgattatcaat 254  Q
    ||||||||||||| ||| |||||| ||| | |  || ||||||||||||| ||||| |||| ||||||||||||| | ||||| ||| ||||| ||||||    
T  38841359 atgtatgcttctatttcctttactacacaaatattcaatgagcttcttgtggaatctcacataagaaggttactcattcaaaacccagttgatcatcaat 38841260  T
Q  255 caccaaccagctccccta 272  Q
    ||| ||||| ||||||||    
T  38841259 cactaaccaactccccta 38841242  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 38859259 - 38859137
Alignment:
Q  3 ataataatagttaaattcaaactttaataaaagcaagataccatatcctatatcatattctataaactaacctatatatagtatagtcctctatcttaga 102  Q
    |||||||| |||||||||||||||||  ||| | |||||||||||||||||| |||||   || ||| | |||||||| |||     | ||||||| |||    
T  38859259 ataataatggttaaattcaaactttataaaaggaaagataccatatcctataccatat---attaaccatcctatataaagt-----catctatctaaga 38859168  T
Q  103 taacataccaacaaccctcaagctctaatta 133  Q
    ||||||||||| |||||||||||||||||||    
T  38859167 taacataccaaaaaccctcaagctctaatta 38859137  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38862134 - 38862083
Alignment:
Q  1 ttataataatagttaaattcaaactttaataaaagcaagataccatatccta 52  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  38862134 ttataataatagttaaactcaaactttagtaaaagcaagatactatatccta 38862083  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 38827655 - 38827599
Alignment:
Q  84 tatagtcctctatcttagataacataccaacaaccctcaagctctaattaactaact 140  Q
    ||||||||||| |||  ||||| ||| ||||||||||||||||||||||||||||||    
T  38827655 tatagtcctctgtctaggataatataacaacaaccctcaagctctaattaactaact 38827599  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 38841507 - 38841463
Alignment:
Q  8 aatagttaaattcaaactttaataaaagcaagataccatatccta 52  Q
    |||||||||||||||||||| |  |||||||||||||||||||||    
T  38841507 aatagttaaattcaaacttttaataaagcaagataccatatccta 38841463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38865572 - 38865520
Alignment:
Q  1 ttataataatagttaaattcaaactttaa-taaaagcaagataccatatccta 52  Q
    |||||||| ||||||| || ||||||||| |||||||||||||||||||||||    
T  38865572 ttataatactagttaatttgaaactttaaataaaagcaagataccatatccta 38865520  T

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