View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_low_29 (Length: 264)

Name: NF21107_low_29
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_low_29
NF21107_low_29
[»] chr4 (5 HSPs)
chr4 (14-250)||(24220593-24220829)
chr4 (60-126)||(1458382-1458448)
chr4 (50-128)||(23602012-23602090)
chr4 (28-97)||(21680075-21680144)
chr4 (50-126)||(47682180-47682256)
[»] chr2 (4 HSPs)
chr2 (50-127)||(40356048-40356125)
chr2 (50-126)||(38119568-38119644)
chr2 (35-128)||(42472462-42472550)
chr2 (28-84)||(13294605-13294661)
[»] chr6 (1 HSPs)
chr6 (35-127)||(22293377-22293469)
[»] chr7 (2 HSPs)
chr7 (35-130)||(26425193-26425288)
chr7 (65-127)||(3526084-3526146)
[»] chr8 (2 HSPs)
chr8 (50-128)||(29442528-29442606)
chr8 (28-128)||(22746302-22746402)
[»] chr1 (4 HSPs)
chr1 (37-168)||(42069745-42069875)
chr1 (28-146)||(33710883-33711001)
chr1 (50-127)||(13260418-13260495)
chr1 (35-75)||(9856853-9856893)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 24220829 - 24220593
Alignment:
Q  14 aggcacaagttttccaaaagttctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24220829 aggcacaagttttccaaaagttctatttaaaattcttaacacaaattaggtttttagacagactgataggtcagaccatgcttttaaaaagatcaggtca 24220730  T
Q  114 tactcaaaataaagcttatggcatgctgataagtcaggcttagattttagtttttaattttaaactagacctaattaacctatttaaggaaagtccgacc 213  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  24220729 tactcaaaataaagcttatggcatgctgataagttagacttagattttagtttttaattttaaattagacctaactaacctatttaaggaaagtccgacc 24220630  T
Q  214 caacctatttccatcattaaaaacaagccaacaacct 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  24220629 caacctatttccatcattaaaaacaagccaacaacct 24220593  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 1458448 - 1458382
Alignment:
Q  60 taggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaa 126  Q
    |||| ||||||||||||| |||||| ||||||  ||||||||||| ||||||||  || ||||||||    
T  1458448 taggcttttagacagactaataggtcagaccagacttttaaaaaggtcaggtcaggcttaaaataaa 1458382  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 23602090 - 23602012
Alignment:
Q  50 taacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaagc 128  Q
    ||||||||| |||| |||||||||  || |||||| || ||| |||||||||||| ||||| || ||| ||||||||||    
T  23602090 taacacaaactaggcttttagacaagctaataggtcaggccaggcttttaaaaaggtcaggccagacttaaaataaagc 23602012  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 21680144 - 21680075
Alignment:
Q  28 caaaagttctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttt 97  Q
    |||| |||||||||||| || |||  |||||||||  |||||||||| || |||||| ||||||||||||    
T  21680144 caaatgttctatttaaattttttagtacaaattagacttttagacaggctaataggtcagaccatgcttt 21680075  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 47682180 - 47682256
Alignment:
Q  50 taacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaa 126  Q
    ||||| ||| |||| ||||||||||||| |||||| ||||||  |||||||||||  |||| || ||| ||||||||    
T  47682180 taacataaactaggcttttagacagactaataggtcagaccagacttttaaaaaggccaggccagacttaaaataaa 47682256  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 40356048 - 40356125
Alignment:
Q  50 taacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaag 127  Q
    ||||| |||||||| ||||||||||||| ||| || ||||||  ||||||||||| ||||||||| || |||||||||    
T  40356048 taacataaattaggcttttagacagactaatatgtcagaccagacttttaaaaaggtcaggtcatgcttaaaataaag 40356125  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 38119644 - 38119568
Alignment:
Q  50 taacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaa 126  Q
    ||||||||| |||  ||||||||||||| ||||   ||||||||||||||||||| ||||||||  || ||||||||    
T  38119644 taacacaaactagacttttagacagactaatagaccagaccatgcttttaaaaaggtcaggtcaggcttaaaataaa 38119568  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 42472462 - 42472550
Alignment:
Q  35 tctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaagc 128  Q
    ||||||| |||||  ||||||||| |||| |||||||||| || ||||| |||     |||||||||||| ||||||||| || ||||||||||    
T  42472462 tctatttgaaatttgtaacacaaactaggcttttagacaggctaataggctag-----gcttttaaaaaggtcaggtcatgcttaaaataaagc 42472550  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 13294605 - 13294661
Alignment:
Q  28 caaaagttctatttaaaattcttaacacaaattaggtttttagacagactgataggt 84  Q
    |||| ||||||||||||||| |||  |||||||||| ||||||||| ||| ||||||    
T  13294605 caaatgttctatttaaaattattattacaaattaggattttagacatactaataggt 13294661  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 22293377 - 22293469
Alignment:
Q  35 tctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaag 127  Q
    ||||||| |||||  ||||||||| |||  |||||||||| || ||||| ||||||| |||||||||||| ||||| || ||| |||||||||    
T  22293377 tctatttgaaatttgtaacacaaactagacttttagacaggctaataggctagaccaagcttttaaaaaggtcaggccaaacttaaaataaag 22293469  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 26425288 - 26425193
Alignment:
Q  35 tctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaagctt 130  Q
    ||||||| |||||  |||||||||  ||  |||||||||| || |||||| ||||||  ||||||||||| |||||||| ||| ||||||||||||    
T  26425288 tctatttgaaatttgtaacacaaacaagacttttagacaggctaataggtcagaccagacttttaaaaaggtcaggtcaaacttaaaataaagctt 26425193  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 3526084 - 3526146
Alignment:
Q  65 ttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaag 127  Q
    ||||||||| | | |||||||||| ||  |||||||||||||||||||| ||| |||||||||    
T  3526084 ttttagacaaattaataggttagaacagacttttaaaaagatcaggtcaaacttaaaataaag 3526146  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 29442606 - 29442528
Alignment:
Q  50 taacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaagc 128  Q
    ||||| ||| ||||||||||||||| || ||||| |||||||  ||||||||||| ||||| || ||| ||||||||||    
T  29442606 taacataaactaggtttttagacaggctaataggctagaccagacttttaaaaaggtcaggacagacttaaaataaagc 29442528  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 22746402 - 22746302
Alignment:
Q  28 caaaagttctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaag 127  Q
    |||| ||| ||||||||||| |||  ||||||||||||||||||||| || ||||| ||| ||   ||||||||||  |||  |||| || |||||||||    
T  22746402 caaatgttatatttaaaattgttagtacaaattaggtttttagacaggctaataggctaggccgatcttttaaaaaagtcatatcatgcttaaaataaag 22746303  T
Q  128 c 128  Q
    |    
T  22746302 c 22746302  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 42069745 - 42069875
Alignment:
Q  37 tatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaagcttatggca 136  Q
    ||||||||||| ||   |||||||||| |||||  |||||| |||||  |||||| | |||||||||||||| |||| ||| |||||||  ||| |  ||    
T  42069745 tatttaaaattgtttgtacaaattaggcttttaagcagactaataggccagaccaggtttttaaaaagatcatgtcagacttaaaataagtctt-taaca 42069843  T
Q  137 tgctgataagtcaggcttagattttagttttt 168  Q
    |||| ||| ||||| |||||| ||||||||||    
T  42069844 tgctaatatgtcagacttagactttagttttt 42069875  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 33710883 - 33711001
Alignment:
Q  28 caaaagttctatttaaaattcttaacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaag 127  Q
    |||| ||| ||||||||||| |||  | |||||||| |||||| |||||| |||||||||  ||  ||||||||||| ||| | |||| | |||||||||    
T  33710883 caaatgttatatttaaaattattagtataaattagggttttaggcagactaataggttaggtcagacttttaaaaaggtcatgccatatttaaaataaag 33710982  T
Q  128 cttatggcatgctgataag 146  Q
    | |||  |||||| |||||    
T  33710983 cctataacatgctaataag 33711001  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 13260418 - 13260495
Alignment:
Q  50 taacacaaattaggtttttagacagactgataggttagaccatgcttttaaaaagatcaggtcatactcaaaataaag 127  Q
    ||||||||| || | |||||||||| || |||||  | ||||||||||||||||| ||||| || ||| |||||||||    
T  13260418 taacacaaactatgcttttagacaggctaataggccataccatgcttttaaaaaggtcaggccagacttaaaataaag 13260495  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 9856893 - 9856853
Alignment:
Q  35 tctatttaaaattcttaacacaaattaggtttttagacaga 75  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  9856893 tctatttgaaatttgtaacacaaattaggtttttagacaga 9856853  T

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