View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_34 (Length: 251)
Name: NF21107_low_34
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 38292624 - 38292401
Alignment:
| Q |
19 |
cgtggaaacttttgtggtccaaaataatgtccctaatgaatatcattacccctcaa--tttgtttgttcattttgaaagttgaagtggggaggcgagaaa |
116 |
Q |
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| T |
38292624 |
cgtggaaacttttgtggtccaaaataatgtgcctaatgaatatcattacccctcaaaatttgtttgttcattttgaaagttgaagtggggaggcgaggaa |
38292525 |
T |
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| Q |
117 |
catgaaacttagaaaggattgttggttgatttggcatgcatcgatttgggtaatttgaaaatctataatgatatcattttcaataataataccttgtaga |
216 |
Q |
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| T |
38292524 |
catgaaacttagaaaggattggtggttgatttggcatgcatcgatttgggtaatttgaaaatctataatgatatca--ttcaataataataccatgtaga |
38292427 |
T |
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| Q |
217 |
ttgatgaaatggttgaggagaataat |
242 |
Q |
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| T |
38292426 |
ttgatgaaatggttgaggagaataat |
38292401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 39610995 - 39611160
Alignment:
| Q |
73 |
aatttgtttgttcattttgaaagttgaagtggggaggcgagaaacatgaaacttagaaaggattgttggttgatttggcatgcatcgatttgggtaattt |
172 |
Q |
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| T |
39610995 |
aatttgtttgtccattttgaatgttggagtggggaggtgagacataagaaacttcaaaaaggttgaaggtcgatttgacatgcaacactttgaatgattt |
39611094 |
T |
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| Q |
173 |
gaaaatct-ataatgatatcattttcaataataataccttgtagattgatgaaatggttgaggaga |
237 |
Q |
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| T |
39611095 |
ggaaatctaaaaatgataaaattttcaataatagtaccaaggagattgatgatatgattgaagaga |
39611160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 13854199 - 13854166
Alignment:
| Q |
76 |
ttgtttgttcattttgaaagttgaagtggggagg |
109 |
Q |
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| T |
13854199 |
ttgtttgttcattttgaaagttggagtggggagg |
13854166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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