View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_35 (Length: 251)
Name: NF21107_low_35
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_35 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 33522952 - 33522729
Alignment:
| Q |
28 |
aagacccaatttgttaagcttttgtactctacatatcatgtcacatctcatcactacatctaaactattcaatttcaaaagaataaatctaaggttaata |
127 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33522952 |
aagacctaatttgttaagcttttgtactctacatatcatgtcacatctcatcactacatctaaactattcaatttcaaaagagcaaatctaaggttaata |
33522853 |
T |
|
| Q |
128 |
atgtgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtcacctaactttaaaatactagattttttgtcatcaaaattgcgtagctc |
227 |
Q |
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|||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33522852 |
atgtgtttgtgtatgggtacacaaatttaacaatatgtacaccctaaaagtcacctaactttaaaatactagattttttgtcatcaaaattgcgtagctc |
33522753 |
T |
|
| Q |
228 |
catcacttcacttgtagtgattta |
251 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33522752 |
catcacttcacttgtagtgattta |
33522729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 14017085 - 14017191
Alignment:
| Q |
76 |
catcactacatctaaactattcaatttcaaaagaataaatctaaggttaataatgtgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaaa |
175 |
Q |
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||||||| |||| || | ||||||||| ||| | ||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
14017085 |
catcactgcatccaagccattcaatttttaaatagtaaatctaaggttaaaggtatgtttgtgtatgggtacacaaatttaacaatttgtgcaccctaaa |
14017184 |
T |
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| Q |
176 |
agtcacc |
182 |
Q |
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||||||| |
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| T |
14017185 |
agtcacc |
14017191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 47891879 - 47891725
Alignment:
| Q |
28 |
aagacccaatttgttaagcttttgtactctacatatcatgtcacatctcatcactacatctaaactattcaatttcaaaagaataaatctaaggttaata |
127 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
47891879 |
aagacccaatttattaagcttttgtaccctacatatcatgtcacatctcatcactacatccaatccattcaatttcaaaagaataaatctaaggttaata |
47891780 |
T |
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| Q |
128 |
atgtgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtcacc |
182 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |
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| T |
47891779 |
atgtgtttgtgtatgggcacacaaatttaacaatttgtgcaccctaaaagtcacc |
47891725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 21014887 - 21014755
Alignment:
| Q |
28 |
aagacccaatttgttaagcttttgtactctacatatcatgtcacatctcatcactacatctaaactattcaatttcaaaagaataaatctaaggttaata |
127 |
Q |
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|||||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||| |
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| T |
21014887 |
aagacccaatttattaagcttttgtactgtatatatcatgtcgcatctcatcactacatccaaaccattcaatttcaaaagaacaaatttaaggttaata |
21014788 |
T |
|
| Q |
128 |
atgtgtttgtgtatgggtacacgaatttaacaa |
160 |
Q |
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|||||||||||||| | ||||| |||||||||| |
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| T |
21014787 |
atgtgtttgtgtatagatacacaaatttaacaa |
21014755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 47892447 - 47892503
Alignment:
| Q |
113 |
aatctaaggttaataatgtgtttgtgtatgggtacacgaatttaacaatctgtgcac |
169 |
Q |
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|||| ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
47892447 |
aatcaaaggttagaaatgtgtttgtgtatgggtacacaaattttacaatttgtgcac |
47892503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 12299167 - 12299320
Alignment:
| Q |
28 |
aagacccaatttgttaagcttttgtactctacatatcatgtcacatctcatcactacatctaaactattcaatttcaaaagaataaatctaaggttaata |
127 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||| | || ||||||||||||||||| |||||||||||||||| |
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| T |
12299167 |
aagacctaatttattaagcttt-gtactctacatatcatgttgcatgtcatcactacatccacaccattcaatttcaaaagaacaaatctaaggttaata |
12299265 |
T |
|
| Q |
128 |
atgtgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtcacc |
182 |
Q |
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||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
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| T |
12299266 |
atgtgtttgtgtatgggtatataaatttaacaatttgtgcaccctaaaagtcacc |
12299320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 31225975 - 31226092
Alignment:
| Q |
28 |
aagacccaatttgttaagcttttgtactctacatatcatgtcacatctcatcactacatctaaactattcaatttcaaaagaataaatctaaggttaata |
127 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| ||||| |||| ||||||||||| |
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| T |
31225975 |
aagacccaatttattgagcttttgtactctacatatcatgtatcatctcatcactatatccaaaccattcaatttcagaagaacaaatttaaggttaata |
31226074 |
T |
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| Q |
128 |
atgtgtttgtgtatgggt |
145 |
Q |
| |
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|| ||||||||||||||| |
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| T |
31226075 |
atctgtttgtgtatgggt |
31226092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 45601147 - 45601198
Alignment:
| Q |
133 |
tttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtcaccta |
184 |
Q |
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||||||||| ||||||||||||||| || |||||||| ||||||||||||| |
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| T |
45601147 |
tttgtgtattggtacacgaatttaatcatttgtgcaccttaaaagtcaccta |
45601198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 43245728 - 43245831
Alignment:
| Q |
75 |
tcatcactacatctaaactattcaatttcaaaagaataaatctaaggttaataatgtgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaa |
174 |
Q |
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||||||| ||||| || | |||||||||| ||| | |||||| ||| |||| | | ||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
43245728 |
tcatcaccacatccaagccattcaatttctaaatagtaaatccaagattaaaagtttgtttgtgtatgggtacacaaatttaacaatttgtgcaccctaa |
43245827 |
T |
|
| Q |
175 |
aagt |
178 |
Q |
| |
|
|||| |
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|
| T |
43245828 |
aagt |
43245831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 43244914 - 43244865
Alignment:
| Q |
131 |
tgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtca |
180 |
Q |
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| T |
43244914 |
tgtttatgtatgggtacacaaatttaacaatttgtataccctaaaagtca |
43244865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 41018987 - 41019093
Alignment:
| Q |
76 |
catcactacatctaaactattcaatttcaaaagaataaatctaaggttaataatgtgtttgtgtatgggtacacgaatttaacaatctgtgcaccctaaa |
175 |
Q |
| |
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|||||| ||||| || | ||||||||| ||| | |||||| |||||||| | || |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
41018987 |
catcaccacatccaagccattcaatttttaaatagtaaatccaaggttaaaggtttgcttgtgtatgggtacacaaatttaacaatttgtgcaccctaaa |
41019086 |
T |
|
| Q |
176 |
agtcacc |
182 |
Q |
| |
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||||||| |
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| T |
41019087 |
agtcacc |
41019093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 18850501 - 18850551
Alignment:
| Q |
134 |
ttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtcaccta |
184 |
Q |
| |
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|||||||||||||||| ||||||||||| |||| ||| |||||| |||||| |
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| T |
18850501 |
ttgtgtatgggtacacaaatttaacaatttgtgtaccttaaaagccaccta |
18850551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 37349914 - 37349964
Alignment:
| Q |
134 |
ttgtgtatgggtacacgaatttaacaatctgtgcaccctaaaagtcaccta |
184 |
Q |
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|||||||||||||||| |||||| |||| ||||||||||||||| |||||| |
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| T |
37349914 |
ttgtgtatgggtacacaaatttatcaatttgtgcaccctaaaagccaccta |
37349964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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