View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_low_36 (Length: 250)

Name: NF21107_low_36
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_low_36
NF21107_low_36
[»] chr2 (3 HSPs)
chr2 (124-240)||(2468052-2468167)
chr2 (127-240)||(12564608-12564721)
chr2 (63-94)||(2467724-2467755)
[»] chr7 (3 HSPs)
chr7 (124-240)||(25987777-25987887)
chr7 (22-90)||(25987281-25987351)
chr7 (127-240)||(7635102-7635215)
[»] chr1 (1 HSPs)
chr1 (127-240)||(13113255-13113368)
[»] chr3 (2 HSPs)
chr3 (124-240)||(1233463-1233579)
chr3 (136-240)||(47772378-47772482)
[»] chr4 (1 HSPs)
chr4 (124-239)||(43040947-43041062)
[»] chr6 (1 HSPs)
chr6 (127-240)||(17798526-17798639)
[»] chr8 (2 HSPs)
chr8 (124-240)||(35780579-35780694)
chr8 (127-240)||(25319871-25319984)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 2468052 - 2468167
Alignment:
Q  124 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 223  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  2468052 gtacatgggtattcggtgcgggaggcatatcgcttcattactagtcacggggatcatttggacaggagtctcgttgacaaggtgtggcacaggtacatac 2468151  T
Q  224 catcaaaggtgtctctg 240  Q
    || | ||||||||||||    
T  2468152 cagc-aaggtgtctctg 2468167  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 12564721 - 12564608
Alignment:
Q  127 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 226  Q
    ||||| || |||||||| ||||| ||| |||| |||||||||||||||||||| ||||| | ||||||| | ||||| || ||||  | | ||||| |      
T  12564721 catggatattcggtgcgagaggcctatcgctttattactagtcatggggatcacttggataggagtctcgtcgacaatgtttggcttaggcacatatcga 12564622  T
Q  227 caaaggtgtctctg 240  Q
    ||||||||||||||    
T  12564621 caaaggtgtctctg 12564608  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 94
Target Start/End: Original strand, 2467724 - 2467755
Alignment:
Q  63 gggctgtggtaccgtgttttaaaagcacgtta 94  Q
    ||||||||||||||||||||||||||||||||    
T  2467724 gggctgtggtaccgtgttttaaaagcacgtta 2467755  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 25987777 - 25987887
Alignment:
Q  124 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 223  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |      ||||||    
T  25987777 gtacatgggtactcggtgcgggaggcatatcgcttcattactagtcatggggatcatttggacaggagtctcgttgacaaggtgtgtc------acatac 25987870  T
Q  224 catcaaaggtgtctctg 240  Q
    |||||||||||||||||    
T  25987871 catcaaaggtgtctctg 25987887  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 25987281 - 25987351
Alignment:
Q  22 acattcaggaacactatta--tataaggatcttagttacggaagggctgtggtaccgtgttttaaaagcac 90  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25987281 acattcaggaaaactattaattataaggatcttagttacggaagggttgtggtaccgtgttttaaaagcac 25987351  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 7635102 - 7635215
Alignment:
Q  127 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 226  Q
    ||||| || |||||||| ||||| ||  |||| |||||||||||||||||||| ||||| | || |||| | ||||| || ||||| | | |||||||      
T  7635102 catggatattcggtgcgagaggcctaccgctttattactagtcatggggatcacttggataggaatctcgtcgacaatgtttggcataggcacataccgg 7635201  T
Q  227 caaaggtgtctctg 240  Q
     |||||||||||||    
T  7635202 taaaggtgtctctg 7635215  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 13113255 - 13113368
Alignment:
Q  127 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 226  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| || |||||||||| |||||||  ||||||||||    
T  13113255 catggttattcggtgcgggaggcatatcgcttcattactagtcatggggatcatttagacaggagtttcgttgacaaggtttggcacagttacataccat 13113354  T
Q  227 caaaggtgtctctg 240  Q
    ||||||||||||||    
T  13113355 caaaggtgtctctg 13113368  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 1233463 - 1233579
Alignment:
Q  124 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 223  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||  | |||||||||| |||||||  |||||||    
T  1233463 gtacatggttattcggtgcgggaggcatatcgcttcattactagtcatggggatcatttagacaggagttccgttgacaaggtttggcacagttacatac 1233562  T
Q  224 catcaaaggtgtctctg 240  Q
    || ||||||||||||||    
T  1233563 cagcaaaggtgtctctg 1233579  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 47772482 - 47772378
Alignment:
Q  136 tcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccatcaaaggtgt 235  Q
    |||||||||||||| ||| |||| |||||||||||||||||||| ||||| | ||||||| | ||||| || || || | | |||||||  |||||||||    
T  47772482 tcggtgcgggaggcctatcgctttattactagtcatggggatcacttggataggagtctcgtcgacaatgtttgtcataggcacataccggcaaaggtgt 47772383  T
Q  236 ctctg 240  Q
    |||||    
T  47772382 ctctg 47772378  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 43040947 - 43041062
Alignment:
Q  124 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 223  Q
    |||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||  | |||||||||| |||||||  |||||||    
T  43040947 gtacatggttattcggtgcgggaggcatatcgcttcattactaatcatggggatcatttagacaggagttccgttgacaaggtttggcacagttacatac 43041046  T
Q  224 catcaaaggtgtctct 239  Q
    |||| |||||||||||    
T  43041047 catccaaggtgtctct 43041062  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 17798639 - 17798526
Alignment:
Q  127 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 226  Q
    ||||| || ||| |||||||||||||| |||||||||||||||||||||||||||| |||| | ||   | ||||||||| |||||||  ||||||||||    
T  17798639 catggttattcgatgcgggaggcatatcgcttcattactagtcatggggatcatttagacaggcgttcaaatgacaaggtttggcacagttacataccat 17798540  T
Q  227 caaaggtgtctctg 240  Q
    ||||||||||||||    
T  17798539 caaaggtgtctctg 17798526  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 35780694 - 35780579
Alignment:
Q  124 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 223  Q
    |||||||| || | |||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||  | |||||||||| |||||||  |||||||    
T  35780694 gtacatggttatttggtgcgggaggcatatcgcttcattactagtcat-gggatcatttagacaggagttccgttgacaaggtttggcacagttacatac 35780596  T
Q  224 catcaaaggtgtctctg 240  Q
    |||| ||||||||||||    
T  35780595 catccaaggtgtctctg 35780579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 25319984 - 25319871
Alignment:
Q  127 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctca-ttgacaaggtgtggcacatgtacatacca 225  Q
    ||||| || |||||||||||||||||| ||||||||  |||||||||||||||||| |||| |||| ||| | |||||||| |||||||  |||||||||    
T  25319984 catggttattcggtgcgggaggcatatcgcttcattgttagtcatggggatcatttagacaggagt-tcagtggacaaggtttggcacaattacatacca 25319886  T
Q  226 tcaaaggtgtctctg 240  Q
    |||||||||||||||    
T  25319885 tcaaaggtgtctctg 25319871  T

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