View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_37 (Length: 249)
Name: NF21107_low_37
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 1958830 - 1958597
Alignment:
| Q |
5 |
agactctttgttttttcattattttgtgttaacttccttggcaagcctaatatgtagtgtagagactcaggctcnnnnnnnnnnnnn-caagtcaaagta |
103 |
Q |
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| T |
1958830 |
agactctttgttttttcattcttttgtgttaacttccttagcaagcctaatatgtagtgtagagactcaggctcaaaaaaggaaaaaacaagtcaaagta |
1958731 |
T |
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| Q |
104 |
ccaagttgttcttgtcctttttcgtattatttttatcataatgaatgcaagatataggaataatattattaataaaaatgggtcaaactgatcaattaga |
203 |
Q |
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| T |
1958730 |
ccaagctgtccttgtcctttttcgtattatttttatcataatgaatgcaagatataggaataatattattaataaaaatgggtcaaactgatcaattgga |
1958631 |
T |
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| Q |
204 |
tcaaaactacaaattcaacatggattgcacttct |
237 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1958630 |
tcaaaactacaaattcaacatggattgcacttct |
1958597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2024722 - 2024859
Alignment:
| Q |
1 |
aattagactctttgttttttcattattttgtgttaacttccttggcaagcctaatatgtagtgtagagactcaggctcnnnnnnnnnnnnncaagtcaaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||| |
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| T |
2024722 |
aattagactccttgttttttcattattttgtgttaacttccttggcaagcaaaa---gtagtgtagagactcgggctcaaaaatggaaaa-caagtcaaa |
2024817 |
T |
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| Q |
101 |
gtaccaagttgttcttgtcctttttcgtattatttttatcat |
142 |
Q |
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| T |
2024818 |
gcactaaactgtccttgtcctttttcgtattatttttatcat |
2024859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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