View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21107_low_4 (Length: 734)
Name: NF21107_low_4
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 445 - 716
Target Start/End: Complemental strand, 39710528 - 39710257
Alignment:
| Q |
445 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39710528 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
39710429 |
T |
|
| Q |
545 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaaaagaaaaccagatctcaccattgttaattgctaaa |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39710428 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcaacattgatacaatcaaaagaaaaccagatctcaccattgttaattgctaaa |
39710329 |
T |
|
| Q |
645 |
ttatttagaggaaggattttaatatgtgttaaaagagtgaaggttggtacttgttatttatagtgaggtgga |
716 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39710328 |
ttatttagaggaaggattttaatatgtgtgaaaagagtgaaggttggtacttgttatttatagtgaggtgga |
39710257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 39710980 - 39710785
Alignment:
| Q |
13 |
catcacaaaagataaaacaaaaatttacaaannnnnnngaagattaaacatgagattttaatctccataaatctaacaaaaagtaaatctcgaaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39710980 |
catcacaaaagataaaacaaaaatttacaattttttttgaagattaaacatgagattttaatctccataaatctaacaaaaagtaaatctcgaaagaaag |
39710881 |
T |
|
| Q |
113 |
actnnnnnnngatgcaatgtaagcattaaaaagtgaagatcttttttatgagattttaatcctcataaataatatcattttttctacggttctttc |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39710880 |
actaaaaaaagatgcaatgtaagcattaaaaagtgaagatcttttttatgagattttaatcctcataaataatatcattttttctacggttctttc |
39710785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 445 - 654
Target Start/End: Original strand, 39691597 - 39691806
Alignment:
| Q |
445 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
544 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||||||| ||| | | ||| |||||||| | |||| | | | || ||||||||| | | |
|
|
| T |
39691597 |
tggattgaacttacaaagtatgtcgttgattcgaaacctagtcctggtcgcccaattattgtagtagtgtcgtgagcttttgactgcccaaccatggttg |
39691696 |
T |
|
| Q |
545 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaaaagaaaaccagatctcaccattgttaattgctaaa |
644 |
Q |
| |
|
||||| ||||||||| |||||| ||| || ||||||||||| |||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
39691697 |
ccaccgacattaaacttgtatgcagatgacaatgaagtgctgagaactagcattgatacaatcaaaacaaaaccatatctcatcattgttaattgctaaa |
39691796 |
T |
|
| Q |
645 |
ttatttagag |
654 |
Q |
| |
|
||||||||| |
|
|
| T |
39691797 |
atatttagag |
39691806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 445 - 654
Target Start/End: Complemental strand, 39703924 - 39703715
Alignment:
| Q |
445 |
tggattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcgg |
544 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| |||||||||| ||| | | ||| |||||||| | |||| | | | || ||||||||| | | |
|
|
| T |
39703924 |
tggattgaacttacaaagtatgtcgttgattcgaaacctagtcctggtcgcccaattattgtagtagtgtcgtgagcttttgactgcccaaccatggttg |
39703825 |
T |
|
| Q |
545 |
ccaccaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaaaagaaaaccagatctcaccattgttaattgctaaa |
644 |
Q |
| |
|
||||| ||||||||| |||||| ||| || ||||||||||| |||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
39703824 |
ccaccgacattaaacttgtatgcagatgacaatgaagtgctgagaactagcattgatacaatcaaaacaaaaccatatctcatcattgttaattgctaaa |
39703725 |
T |
|
| Q |
645 |
ttatttagag |
654 |
Q |
| |
|
||||||||| |
|
|
| T |
39703724 |
atatttagag |
39703715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 39710735 - 39710643
Alignment:
| Q |
252 |
acaagatgttgtcggttttatggtagagatatannnnnnnnctttcgaaatggaaaaatttatccaaaggctctaaataaaatacaagatgtg |
344 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39710735 |
acaagatgttgtaggttttatggtagagatatattttttttctttcgaaatggaaaaatttatccaaaggctctaaataaaatacaagatgtg |
39710643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 634
Target Start/End: Original strand, 38712063 - 38712247
Alignment:
| Q |
447 |
gattgaacttacgaagtgtgtcgttgatttgaaacctagttctgctagaccatgcattgtagtgttcaggtgaacgtcttacaccccaaccattgcggcc |
546 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||| |||| |||||| | ||| |||||| |||| || | ||||||||||||| | ||| |
|
|
| T |
38712063 |
gattgaacttacaaagtgtgtcattgacttgaaacctcattctttcagaccaagaattatagtgtc---gtgagggtttgacaccccaaccatcgttgcc |
38712159 |
T |
|
| Q |
547 |
accaacattaaacatgtatgaagacgataatgaagtgctaagaatcagcattgatacaatcaaaagaaaaccagatctcaccattgtt |
634 |
Q |
| |
|
|||||| ||||| |||||| ||| || || ||| | | | |||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
38712160 |
accaacgttaaagttgtatgcagatgacaacgaaattatgaaaatcagcattgacacaaacaaaagaaaacctaatctcaccattgtt |
38712247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 484
Target Start/End: Complemental strand, 51319253 - 51319214
Alignment:
| Q |
445 |
tggattgaacttacgaagtgtgtcgttgatttgaaaccta |
484 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
51319253 |
tggattgaacttacaaagcgtgtcgttgatttgaaaccta |
51319214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University