View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_49 (Length: 237)
Name: NF21107_low_49
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 25986910 - 25986728
Alignment:
| Q |
39 |
attacaggatttggtcgtgattacatttggtactacttctatccgcacttatgttttctcaacatgtgccattttagctagaatgttagcatcctgattt |
138 |
Q |
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| T |
25986910 |
attataggatttggttgtgattacatttggtacttcttctatctgcacttatgttttctcaacaagtgccattttaggtcgaatgttagcatcctgattt |
25986811 |
T |
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| Q |
139 |
ttatacttagcttggtgtaatggtagaagggatatgtaacatatgcttggtgtaatggtagaaggatatgtgacttatacttg |
221 |
Q |
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| T |
25986810 |
ttatacttagcttggtgtaatggtagaagggatatgtaacatatgcttggtgtaatggtagaaggatatgtgacttatacttg |
25986728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 25986766 - 25986711
Alignment:
| Q |
148 |
gcttggtgtaatggtagaagggatatgtaacatatgcttggtgtaatggtagaagga |
204 |
Q |
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| T |
25986766 |
gcttggtgtaatggtagaagg-atatgtgacttatacttggtgtaatggtagaagga |
25986711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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