View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_low_51 (Length: 222)

Name: NF21107_low_51
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_low_51
NF21107_low_51
[»] chr7 (29 HSPs)
chr7 (37-110)||(42663196-42663269)
chr7 (41-107)||(38096329-38096395)
chr7 (40-107)||(33223418-33223485)
chr7 (39-93)||(41966457-41966511)
chr7 (41-107)||(34992225-34992291)
chr7 (46-87)||(22918465-22918506)
chr7 (38-101)||(7807175-7807239)
chr7 (190-222)||(20406541-20406573)
chr7 (40-107)||(40717127-40717195)
chr7 (38-98)||(46651796-46651856)
chr7 (37-72)||(30982252-30982287)
chr7 (48-87)||(43025348-43025387)
chr7 (38-93)||(43445536-43445591)
chr7 (36-66)||(155866-155896)
chr7 (35-65)||(43657159-43657189)
chr7 (40-93)||(10591281-10591334)
chr7 (40-93)||(12142013-12142066)
chr7 (40-93)||(21858876-21858929)
chr7 (46-87)||(30941392-30941433)
chr7 (34-107)||(37351873-37351946)
chr7 (38-94)||(43260118-43260175)
chr7 (46-87)||(44895596-44895637)
chr7 (190-222)||(2347098-2347130)
chr7 (190-222)||(4971290-4971322)
chr7 (190-222)||(19426580-19426612)
chr7 (37-65)||(29355489-29355517)
chr7 (190-222)||(33050183-33050215)
chr7 (190-222)||(37856193-37856225)
chr7 (46-89)||(44649347-44649391)
[»] chr5 (33 HSPs)
chr5 (38-107)||(8897497-8897566)
chr5 (40-107)||(35233345-35233412)
chr5 (40-107)||(36572806-36572873)
chr5 (39-107)||(6538985-6539050)
chr5 (46-87)||(39807738-39807779)
chr5 (38-102)||(2117527-2117591)
chr5 (40-92)||(12718269-12718321)
chr5 (40-110)||(16202832-16202903)
chr5 (46-87)||(33037526-33037567)
chr5 (40-92)||(12779495-12779547)
chr5 (38-102)||(19127244-19127308)
chr5 (42-110)||(32053850-32053918)
chr5 (33-72)||(7076418-7076457)
chr5 (38-93)||(9403642-9403697)
chr5 (35-66)||(11767874-11767905)
chr5 (37-98)||(5130263-5130325)
chr5 (46-84)||(22649688-22649726)
chr5 (40-98)||(24431507-24431565)
chr5 (40-98)||(39595398-39595456)
chr5 (41-98)||(125216-125273)
chr5 (46-87)||(5721841-5721882)
chr5 (46-87)||(15479475-15479516)
chr5 (46-87)||(19522027-19522068)
chr5 (38-98)||(21749482-21749543)
chr5 (44-93)||(23991027-23991076)
chr5 (46-87)||(28306156-28306197)
chr5 (190-222)||(14914372-14914404)
chr5 (190-222)||(16143390-16143422)
chr5 (190-222)||(28501592-28501624)
chr5 (38-98)||(33567126-33567186)
chr5 (190-222)||(33823732-33823764)
chr5 (190-222)||(38500943-38500975)
chr5 (190-222)||(42699057-42699089)
[»] chr3 (31 HSPs)
chr3 (40-107)||(43333559-43333626)
chr3 (38-107)||(41717565-41717634)
chr3 (38-107)||(46092846-46092915)
chr3 (35-98)||(46473252-46473315)
chr3 (37-93)||(20380775-20380831)
chr3 (46-87)||(5114084-5114125)
chr3 (46-87)||(36671038-36671079)
chr3 (48-87)||(13735137-13735176)
chr3 (38-92)||(44365178-44365233)
chr3 (37-72)||(51464152-51464187)
chr3 (40-98)||(29706027-29706085)
chr3 (46-87)||(26014818-26014859)
chr3 (38-110)||(31997914-31997987)
chr3 (46-87)||(33939242-33939283)
chr3 (46-87)||(42357104-42357145)
chr3 (46-87)||(46623913-46623954)
chr3 (46-87)||(47472335-47472376)
chr3 (46-87)||(52254162-52254203)
chr3 (46-87)||(52939659-52939700)
chr3 (190-222)||(462440-462472)
chr3 (190-222)||(8254027-8254059)
chr3 (38-98)||(11173574-11173634)
chr3 (190-222)||(11327108-11327140)
chr3 (190-222)||(35376590-35376622)
chr3 (190-222)||(43169781-43169813)
chr3 (39-87)||(46953084-46953132)
chr3 (190-222)||(47683801-47683833)
chr3 (190-222)||(48405410-48405442)
chr3 (190-222)||(49196696-49196728)
chr3 (190-222)||(52564673-52564705)
chr3 (190-222)||(53932430-53932462)
[»] chr2 (21 HSPs)
chr2 (37-107)||(28244243-28244313)
chr2 (41-107)||(36180618-36180684)
chr2 (40-107)||(10749568-10749635)
chr2 (38-107)||(36816303-36816372)
chr2 (38-107)||(3933075-3933144)
chr2 (38-98)||(13711185-13711245)
chr2 (38-98)||(36133098-36133158)
chr2 (48-87)||(1248694-1248733)
chr2 (40-91)||(39247431-39247482)
chr2 (46-87)||(18254233-18254274)
chr2 (46-87)||(22888845-22888886)
chr2 (46-87)||(34945114-34945155)
chr2 (46-87)||(43487385-43487426)
chr2 (38-98)||(3091865-3091925)
chr2 (190-222)||(4344449-4344481)
chr2 (34-98)||(13104603-13104667)
chr2 (40-92)||(14714116-14714168)
chr2 (190-222)||(29795447-29795479)
chr2 (190-222)||(31296884-31296916)
chr2 (190-222)||(35171265-35171297)
chr2 (190-222)||(36909882-36909914)
[»] chr4 (36 HSPs)
chr4 (40-109)||(6309353-6309422)
chr4 (38-107)||(19246003-19246072)
chr4 (38-102)||(1033268-1033332)
chr4 (27-98)||(48372101-48372173)
chr4 (37-107)||(38134094-38134164)
chr4 (62-98)||(40983254-40983290)
chr4 (40-102)||(15596516-15596578)
chr4 (36-102)||(36444280-36444346)
chr4 (46-87)||(38134359-38134400)
chr4 (35-98)||(31240772-31240836)
chr4 (38-98)||(42915106-42915166)
chr4 (36-87)||(23369356-23369407)
chr4 (39-98)||(31275270-31275329)
chr4 (39-98)||(51389440-51389499)
chr4 (40-98)||(6371440-6371498)
chr4 (34-92)||(28481295-28481353)
chr4 (34-92)||(28482170-28482228)
chr4 (46-87)||(5622464-5622505)
chr4 (40-92)||(6953276-6953329)
chr4 (41-74)||(9567580-9567613)
chr4 (46-87)||(37997262-37997303)
chr4 (46-87)||(38376515-38376556)
chr4 (190-222)||(169541-169573)
chr4 (190-222)||(2109443-2109475)
chr4 (190-222)||(10994191-10994223)
chr4 (37-65)||(11063975-11064003)
chr4 (190-222)||(13267517-13267549)
chr4 (40-92)||(28480427-28480479)
chr4 (190-222)||(30042134-30042166)
chr4 (190-222)||(32365695-32365727)
chr4 (190-222)||(34259815-34259847)
chr4 (190-222)||(39010176-39010208)
chr4 (190-222)||(43168753-43168785)
chr4 (190-222)||(51359829-51359861)
chr4 (190-222)||(54036557-54036589)
chr4 (34-66)||(55960857-55960889)
[»] chr1 (32 HSPs)
chr1 (40-96)||(9445231-9445287)
chr1 (38-103)||(17390756-17390821)
chr1 (42-89)||(51866192-51866239)
chr1 (39-107)||(23226301-23226369)
chr1 (38-101)||(8934421-8934484)
chr1 (43-110)||(27091460-27091527)
chr1 (40-102)||(2362489-2362551)
chr1 (39-101)||(51571547-51571609)
chr1 (39-107)||(7648364-7648433)
chr1 (62-107)||(47117843-47117888)
chr1 (37-93)||(45740430-45740486)
chr1 (46-89)||(2571641-2571684)
chr1 (36-87)||(33100804-33100855)
chr1 (37-87)||(41558128-41558178)
chr1 (46-87)||(3159382-3159423)
chr1 (46-87)||(8350220-8350261)
chr1 (46-87)||(30735317-30735358)
chr1 (34-87)||(35369694-35369747)
chr1 (46-110)||(36230202-36230267)
chr1 (46-87)||(37685337-37685378)
chr1 (46-87)||(37700140-37700181)
chr1 (40-102)||(6841909-6841973)
chr1 (190-222)||(9011645-9011677)
chr1 (190-222)||(27687547-27687579)
chr1 (37-65)||(28716300-28716328)
chr1 (37-93)||(31427843-31427899)
chr1 (190-222)||(39669806-39669838)
chr1 (190-222)||(40596082-40596114)
chr1 (190-222)||(40612114-40612146)
chr1 (190-222)||(41507222-41507254)
chr1 (190-222)||(42256460-42256492)
chr1 (190-222)||(48325806-48325838)
[»] chr8 (23 HSPs)
chr8 (40-107)||(44086401-44086468)
chr8 (46-107)||(39021338-39021399)
chr8 (34-98)||(40413246-40413310)
chr8 (41-108)||(2520019-2520086)
chr8 (38-98)||(23258156-23258216)
chr8 (39-102)||(39027602-39027665)
chr8 (34-107)||(33415593-33415667)
chr8 (43-93)||(38128418-38128468)
chr8 (40-98)||(37101574-37101633)
chr8 (38-72)||(30925541-30925575)
chr8 (38-84)||(42659303-42659349)
chr8 (46-87)||(27325764-27325805)
chr8 (39-92)||(28927811-28927864)
chr8 (34-98)||(42543363-42543428)
chr8 (38-90)||(5502494-5502546)
chr8 (43-107)||(6162063-6162127)
chr8 (46-74)||(11253577-11253605)
chr8 (190-222)||(21273749-21273781)
chr8 (40-107)||(38779134-38779202)
chr8 (190-222)||(38844829-38844861)
chr8 (190-222)||(43873730-43873762)
chr8 (47-107)||(44068786-44068846)
chr8 (190-222)||(44380653-44380685)
[»] chr6 (18 HSPs)
chr6 (44-107)||(17768041-17768104)
chr6 (43-110)||(29173101-29173168)
chr6 (40-102)||(32853033-32853095)
chr6 (47-107)||(1688268-1688329)
chr6 (40-110)||(14803262-14803332)
chr6 (40-107)||(25995557-25995624)
chr6 (40-107)||(26095020-26095087)
chr6 (192-222)||(237439-237469)
chr6 (46-84)||(5570360-5570398)
chr6 (37-87)||(22079587-22079637)
chr6 (38-72)||(25554383-25554417)
chr6 (46-87)||(8098619-8098660)
chr6 (46-87)||(14817938-14817979)
chr6 (46-87)||(25811862-25811903)
chr6 (46-87)||(34047393-34047434)
chr6 (190-222)||(3339538-3339570)
chr6 (190-222)||(11785355-11785387)
chr6 (36-107)||(24437559-24437630)
[»] scaffold0153 (1 HSPs)
scaffold0153 (44-107)||(18643-18706)
[»] scaffold0204 (1 HSPs)
scaffold0204 (38-107)||(27454-27524)
[»] scaffold0115 (1 HSPs)
scaffold0115 (29-94)||(15067-15132)
[»] scaffold0036 (1 HSPs)
scaffold0036 (34-94)||(18131-18191)
[»] scaffold0098 (1 HSPs)
scaffold0098 (34-87)||(49289-49342)
[»] scaffold0001 (1 HSPs)
scaffold0001 (37-74)||(396010-396047)
[»] scaffold0519 (1 HSPs)
scaffold0519 (46-74)||(11789-11817)
[»] scaffold0060 (1 HSPs)
scaffold0060 (40-72)||(6967-6999)
[»] scaffold0018 (1 HSPs)
scaffold0018 (38-93)||(36130-36186)


Alignment Details
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 42663269 - 42663196
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctattagt 110  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||    
T  42663269 taagagtagtgatatttgaacaaccattttttacaactatcatgacaacttctttttcctatctttctattagt 42663196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 38096329 - 38096395
Alignment:
Q  41 agtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  38096329 agtagtgatatttgaacaactattttttacaattattatgacaacttctttttcttctctttctatt 38096395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 33223418 - 33223485
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||| ||| |||||| |||| ||| ||||||||||||||||||||| ||| ||||    
T  33223418 gagtagtgatatttgaataactatttttgacaactatcatgacaacttctttttcctctctttttatt 33223485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 41966511 - 41966457
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    |||||||||||||||||||||| |||||  |||||| ||||||||||||||||||    
T  41966511 agagtagtgatatttgaacaactattttaaacaatttttatgacaacttcttttt 41966457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 34992225 - 34992291
Alignment:
Q  41 agtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||  |||||| | || ||| ||| ||||||| ||||||||||||||||||    
T  34992225 agtagtgatatttgaacaattatttttgataactataatgtcaacttccttttcctctttttctatt 34992291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 22918506 - 22918465
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  22918506 tgatatttgaacaaccattttttacaatttttatgactactt 22918465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 7807239 - 7807175
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttcctctttt 101  Q
    ||||||||||||||||||||||||||||  ||||| || | |||||||||||||||  |||||||    
T  7807239 aagagtagtgatatttgaacaaccatttcatacaacttttgatgacaacttcttttctctctttt 7807175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 20406573 - 20406541
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||||||||||||||||||||||||||||    
T  20406573 tgtcacaagatggttgtacaaatatcatttctc 20406541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 40717127 - 40717195
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||||||||  ||||| || || ||||||||||||||| |||| ||| ||||    
T  40717127 gagtagtgatatttgaacaaccatttcatacaactttttgtgacaacttcttttttctctctttttatt 40717195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 46651856 - 46651796
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||||||||||||||||||| |  ||||||| || ||||||||||| ||| ||||    
T  46651856 aagagtagtgatatttgaacaaccatatgatacaattcttgtgacaacttctattttctct 46651796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 30982252 - 30982287
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaa 72  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30982252 taagagtagtgatatttgaacaaccatttttgacaa 30982287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 43025348 - 43025387
Alignment:
Q  48 atatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  43025348 atatttgaacaaccattttttacaatttttgtgacaactt 43025387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 43445591 - 43445536
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    |||||||||||||||||||||| |||||  ||||||| || |||||| ||||||||    
T  43445591 aagagtagtgatatttgaacaatcatttgatacaatttttgtgacaatttcttttt 43445536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 155866 - 155896
Alignment:
Q  36 ttaagagtagtgatatttgaacaaccatttt 66  Q
    |||||||||||||||||||||||||||||||    
T  155866 ttaagagtagtgatatttgaacaaccatttt 155896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 43657189 - 43657159
Alignment:
Q  35 tttaagagtagtgatatttgaacaaccattt 65  Q
    |||||||||||||||||||||||||||||||    
T  43657189 tttaagagtagtgatatttgaacaaccattt 43657159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 10591334 - 10591281
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    ||||||||||||||||||||||||||   |||| | || |||||||||||||||    
T  10591334 gagtagtgatatttgaacaaccatttgagacaacttttgtgacaacttcttttt 10591281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 12142066 - 12142013
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    ||||||||||||||||||||||||||  ||||| | || ||||||||| |||||    
T  12142066 gagtagtgatatttgaacaaccatttgatacaacttttgtgacaactttttttt 12142013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 21858929 - 21858876
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    |||||||||||||||||||||||||||  |||| | || ||| |||||||||||    
T  21858929 gagtagtgatatttgaacaaccattttaaacaacttttgtgataacttcttttt 21858876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 30941392 - 30941433
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  30941392 tgatatttgaacaaccattttttacaacttttgtgacaactt 30941433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 37351873 - 37351946
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||||||||| |||||  || || | || |||||| |||||||| |||| ||| ||||    
T  37351873 ttttaagagtagtgatatttgaacaatcatttgatataacttttgtgacaatttcttttttctctctttttatt 37351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 43260175 - 43260118
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttc 94  Q
    ||||||||| ||||||||||||||||||  ||||| || | |||||||||||||||||    
T  43260175 aagagtagtcatatttgaacaaccatttcatacaacttttgatgacaacttctttttc 43260118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 44895637 - 44895596
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  44895637 tgatatttgaacaaccattttttacaacttttgtgacaactt 44895596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 2347098 - 2347130
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  2347098 tgtcacaaaatggttgtacaaatatcatttctc 2347130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 4971322 - 4971290
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  4971322 tgtcacaaaatggttgtacaaatatcatttctc 4971290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 19426612 - 19426580
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  19426612 tgtcacaaaatggttgtacaaatatcatttctc 19426580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 29355517 - 29355489
Alignment:
Q  37 taagagtagtgatatttgaacaaccattt 65  Q
    |||||||||||||||||||||||||||||    
T  29355517 taagagtagtgatatttgaacaaccattt 29355489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 33050215 - 33050183
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  33050215 tgtcacaaaatggttgtacaaatatcatttctc 33050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 37856193 - 37856225
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  37856193 tgtcacaaaatggttgtacaaatatcatttctc 37856225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 44649391 - 44649347
Alignment:
Q  46 tgatatttgaacaaccatttttt-acaattattatgacaacttct 89  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||    
T  44649391 tgatatttgaacaaccaatttttgacaatttttatgacaacttct 44649347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 8897566 - 8897497
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  8897566 aagagtagtgatatttgaacaaccatttttgacaattatcatgacaacttccttttcctctttttctatt 8897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 35233345 - 35233412
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||    
T  35233345 gagtactgatatttgaacaactattttttacaactattataacaacttctttttcctctctttctatt 35233412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 36572873 - 36572806
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| | ||||||||    
T  36572873 gagtaatgatatttgaacaacaattttttacaactatcatgacaacttctttttcctatctttctatt 36572806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 6539050 - 6538985
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||| ||||||| | ||||||   ||||||||||||||||||| ||||||||    
T  6539050 agagtagtgatatttgaacaatcatttttgataattat---gacaacttctttttcctctatttctatt 6538985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 39807779 - 39807738
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  39807779 tgatatttgaacaaccattttttacaatttttatgacaactt 39807738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 2117527 - 2117591
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    ||||||||||||||||||||||| ||||  ||||| | || ||||||||||||||| ||||||||    
T  2117527 aagagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctcttttt 2117591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 12718269 - 12718321
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    |||||||||||||||||||||||||||  |||||| || ||||||||||||||    
T  12718269 gagtagtgatatttgaacaaccattttcaacaatttttgtgacaacttctttt 12718321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 16202903 - 16202832
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattatta-tgacaacttctttttcctctttttctattagt 110  Q
    |||||||||||||||||||| |||||  ||||| | ||| ||||||||||||||| |||| |||||||||||    
T  16202903 gagtagtgatatttgaacaatcatttcatacaacttttagtgacaacttcttttttctctctttctattagt 16202832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 33037526 - 33037567
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  33037526 tgatatttgaacaaccattttttacaacttttatgacaactt 33037567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 12779495 - 12779547
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    ||||||||||||||||| |||||||||  |||||| || ||||||||||||||    
T  12779495 gagtagtgatatttgaataaccattttcaacaatttttgtgacaacttctttt 12779547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 19127308 - 19127244
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    |||||||||||||||||||||||||||||  |||| | ||  |||||||||||||| ||| ||||    
T  19127308 aagagtagtgatatttgaacaaccattttaaacaacttttgcgacaacttcttttttctcatttt 19127244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 32053918 - 32053850
Alignment:
Q  42 gtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctattagt 110  Q
    |||||||||||||||||||  ||| | |||| |||||||| |||||||||||||| | ||| |||||||    
T  32053918 gtagtgatatttgaacaactttttctgacaactattatgataacttctttttcctttctttttattagt 32053850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 7076418 - 7076457
Alignment:
Q  33 gttttaagagtagtgatatttgaacaaccattttttacaa 72  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  7076418 gttttaagagaaatgatatttgaacaaccattttttacaa 7076457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 9403697 - 9403642
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    |||||||||||||||| |||||||||||  ||||| | || |||||||||||||||    
T  9403697 aagagtagtgatatttaaacaaccatttgatacaacttttgtgacaacttcttttt 9403642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 11767874 - 11767905
Alignment:
Q  35 tttaagagtagtgatatttgaacaaccatttt 66  Q
    ||||||||||||||||||||||||||||||||    
T  11767874 tttaagagtagtgatatttgaacaaccatttt 11767905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 5130263 - 5130325
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttcctct 98  Q
    |||||||||||||||||||||||| ||||  ||||| || || ||||||||||||||| ||||    
T  5130263 taagagtagtgatatttgaacaactatttcatacaattttttgtgacaacttcttttttctct 5130325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 22649726 - 22649688
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaa 84  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  22649726 tgatatttgaacaaccattttttacaatttttgtgacaa 22649688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 24431507 - 24431565
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||||||   |||| |||| |||||||||| |||| ||||    
T  24431507 gagtagtgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctct 24431565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 39595456 - 39595398
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||| ||||||||||||||||||||  ||||| | || ||||||||||||||| ||||    
T  39595456 gagtaatgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctct 39595398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 125273 - 125216
Alignment:
Q  41 agtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||||||||||||||||||  ||||| | ||  |||||||||||||| ||||    
T  125273 agtagtgatatttgaacaaccatttgatacaacttttgcgacaacttcttttttctct 125216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 5721882 - 5721841
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||| ||||||||||||| || |||||||||    
T  5721882 tgatatttgaacaactattttttacaatttttgtgacaactt 5721841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 15479475 - 15479516
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||| |||||||||||| | ||||||||||||    
T  15479475 tgatatttgaacaatcattttttacaacttttatgacaactt 15479516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 19522068 - 19522027
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  19522068 tgatatttgaacaaccattttttacaacttttgtgacaactt 19522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 21749543 - 21749482
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattatt-atgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||||||||| || |||| ||  |||||| |||||||| ||||    
T  21749543 aagagtagtgatatttgaacaaccattttatataatttttggtgacaatttcttttttctct 21749482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 23991027 - 23991076
Alignment:
Q  44 agtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    |||||||||||||||| ||||||| |||| ||| || |||||||||||||    
T  23991027 agtgatatttgaacaatcatttttgacaactatcataacaacttcttttt 23991076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 28306197 - 28306156
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  28306197 tgatatttgaacaaccattttttacaacttttgtgacaactt 28306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 14914404 - 14914372
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  14914404 tgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 16143422 - 16143390
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  16143422 tgtcacaaaatggttgtacaaatatcatttctc 16143390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 28501624 - 28501592
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  28501624 tgtcacaaaatggttgtacaaatatcatttctc 28501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 33567126 - 33567186
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||||||| |||||||||||||  ||||| | || |||||| |||||||| ||||    
T  33567126 aagagtagtgatatatgaacaaccatttgatacaacttttgtgacaatttcttttttctct 33567186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 33823732 - 33823764
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    ||||||||| |||||||||||||||||||||||    
T  33823732 tgtcacaagttggttgtacaaatatcatttctc 33823764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 38500975 - 38500943
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  38500975 tgtcacaaaatggttgtacaaatatcatttctc 38500943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 42699089 - 42699057
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  42699089 tgtcacaaaatggttgtacaaatatcatttctc 42699057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 43333559 - 43333626
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  43333559 gagtggtgatatttgaacaactattttttacaactatcatgacaacttctttttcctctttttctatt 43333626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 41717634 - 41717565
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||    
T  41717634 aagagcagtgatatttgaacaaccatttttaacaactatcatgacaacttctttttcctctctttctatt 41717565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 46092846 - 46092915
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||| ||||    
T  46092846 aagagtagtgatatttgaacaaccattttttacaattatcattacaacttttttttcctctctttttatt 46092915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 46473315 - 46473252
Alignment:
Q  35 tttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||| ||||||||||||||||||||  ||||| | |||||||||||||||||| ||||    
T  46473315 tttaagagtaatgatatttgaacaaccatttgatacaacttttatgacaacttcttttttctct 46473252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 20380775 - 20380831
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    ||||||||||||||||||||||||||||||  |||| | || |||||||||||||||    
T  20380775 taagagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttt 20380831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 5114084 - 5114125
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  5114084 tgatatttgaacaaccattttttacaatttttttgacaactt 5114125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 36671079 - 36671038
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  36671079 tgatatttgaacaaccattttttacaatttttgtgacaactt 36671038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 13735137 - 13735176
Alignment:
Q  48 atatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  13735137 atatttgaacaaccattttttacaatttttgtgacaactt 13735176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 44365178 - 44365233
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattatt-atgacaacttctttt 92  Q
    |||||| |||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  44365178 aagagtggtgatatttgaacaaccattttatacaatttttggtgacaacttctttt 44365233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 51464152 - 51464187
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaa 72  Q
    |||||||||||||||||||||||||||||| |||||    
T  51464152 taagagtagtgatatttgaacaaccattttatacaa 51464187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 29706085 - 29706027
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||| ||||  ||||| | || ||||||||||||||| ||||    
T  29706085 gagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctct 29706027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 26014818 - 26014859
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  26014818 tgatatttgaacaaccattttttacaacttttgtgacaactt 26014859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 31997987 - 31997914
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttcctctttttctattagt 110  Q
    ||||||||||||||||||||||||||||   |||| || | |||||||||||||||  |||| ||| |||||||    
T  31997987 aagagtagtgatatttgaacaaccatttgagacaacttttgatgacaacttcttttctctctctttttattagt 31997914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 33939242 - 33939283
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||||||||||||| |||| || |||||||||    
T  33939242 tgatatttgaacaaccattttttataatttttgtgacaactt 33939283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 42357145 - 42357104
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  42357145 tgatatttgaacaaccattttttacaacttttgtgacaactt 42357104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 46623913 - 46623954
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  46623913 tgatatttgaacaaccattttttacaacttttgtgacaactt 46623954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 47472335 - 47472376
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  47472335 tgatatttgaacaaccattttttacaacttttgtgacaactt 47472376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 52254203 - 52254162
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||| ||||||| | ||||||||||||    
T  52254203 tgatatttgaacaaccattgtttacaacttttatgacaactt 52254162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 52939659 - 52939700
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  52939659 tgatatttgaacaaccattttttacaacttttgtgacaactt 52939700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 462440 - 462472
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  462440 tgtcacaaaatggttgtacaaatatcatttctc 462472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 8254059 - 8254027
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  8254059 tgtcacaaaatggttgtacaaatatcatttctc 8254027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 11173634 - 11173574
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||| | ||||||||||||||||||  ||||| | || ||||||||||||||| ||||    
T  11173634 aagagtaataatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctct 11173574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 11327140 - 11327108
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  11327140 tgtcacaaaatggttgtacaaatatcatttctc 11327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 35376590 - 35376622
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  35376590 tgtcacaaaatggttgtacaaatatcatttctc 35376622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 43169781 - 43169813
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  43169781 tgtcacaaaatggttgtacaaatatcatttctc 43169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 46953132 - 46953084
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||||||||||| ||||  ||||| | ||||||||||||    
T  46953132 agagtagtgatatttgaacaactatttgatacaacttttatgacaactt 46953084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 47683833 - 47683801
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  47683833 tgtcacaaaatggttgtacaaatatcatttctc 47683801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 48405442 - 48405410
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  48405442 tgtcacaaaatggttgtacaaatatcatttctc 48405410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 49196728 - 49196696
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  49196728 tgtcacaaaatggttgtacaaatatcatttctc 49196696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 52564673 - 52564705
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  52564673 tgtcacaaaatggttgtacaaatatcatttctc 52564705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 53932430 - 53932462
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  53932430 tgtcacaaaatggttgtacaaatatcatttctc 53932462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 28244243 - 28244313
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||||||||||| |||| ||||||||    
T  28244243 taagagtagtgatatttgaacaaccattttttacaaccatcatgacaacttcttttttctctctttctatt 28244313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 36180684 - 36180618
Alignment:
Q  41 agtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  36180684 agtagtgatatttgaacaactattttttacaactatcatgacaacttctttttcctctctttctatt 36180618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 10749568 - 10749635
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||| ||||||||    
T  10749568 gagtagtgatatttgaacaaccatttttgacaactatcatgacaacttccttttcctctctttctatt 10749635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 36816303 - 36816372
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||||| ||||||| |||| ||| ||||||||| | ||||||||| ||||||||    
T  36816303 aagagtagtgatatttgaacaatcatttttgacaactatcatgacaactgcattttcctctctttctatt 36816372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 3933144 - 3933075
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||  ||| |||||| |||||||| ||| |||||| |||||||||| ||||||||    
T  3933144 aagagtagtgatatttgacaaacaatttttgacaattatcatggcaacttttttttcctctctttctatt 3933075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 13711245 - 13711185
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||| ||||| ||||| | || ||||||||||||||| ||||    
T  13711245 aagagtagtgatatttgaacaactattttgtacaacttttgtgacaacttcttttttctct 13711185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 36133158 - 36133098
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||| ||||  ||||| | || ||||||||||||||| ||||    
T  36133158 aagagtagtgatatttgaacaactatttcatacaacttttgtgacaacttcttttttctct 36133098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 1248694 - 1248733
Alignment:
Q  48 atatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  1248694 atatttgaacaaccattttttacaacttttatgacaactt 1248733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 39247431 - 39247482
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttcttt 91  Q
    |||||||||||||||||||| ||||||| | || ||| ||||||||||||||    
T  39247431 gagtagtgatatttgaacaatcatttttgataactatcatgacaacttcttt 39247482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 18254274 - 18254233
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  18254274 tgatatttgaacaaccattttttacaacttttgtgacaactt 18254233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 22888886 - 22888845
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||||||||||| |||||| || |||||||||    
T  22888886 tgatatttgaacaaccatttttgacaatttttgtgacaactt 22888845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 34945155 - 34945114
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||| ||||||||| |||| ||||||||||||    
T  34945155 tgatatttgaacaatcattttttataatttttatgacaactt 34945114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 43487385 - 43487426
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||||||||||||| |||| || |||||||||    
T  43487385 tgatatttgaacaaccattttttataatttttgtgacaactt 43487426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 3091925 - 3091865
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||  ||||  ||||| | || ||||||||||||||| ||||    
T  3091925 aagagtagtgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctct 3091865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 4344481 - 4344449
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  4344481 tgtcacaaaatggttgtacaaatatcatttctc 4344449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 13104667 - 13104603
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||||||| ||||||||||||||| |   |||||| || ||||||||| ||||| ||||    
T  13104667 ttttaagagtagtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctct 13104603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 14714168 - 14714116
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    ||||||||||||||||||| ||||||   |||||| || ||||||||||||||    
T  14714168 gagtagtgatatttgaacatccatttgagacaatttttgtgacaacttctttt 14714116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 29795479 - 29795447
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  29795479 tgtcacaaaatggttgtacaaatatcatttctc 29795447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 31296884 - 31296916
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  31296884 tgtcacaaaatggttgtacaaatatcatttctc 31296916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 35171265 - 35171297
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  35171265 tgtcacaaaatggttgtacaaatatcatttctc 35171297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 36909882 - 36909914
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  36909882 tgtcacaaaatggttgtacaaatatcatttctc 36909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 6309422 - 6309353
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctattag 109  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||| ||||||||||    
T  6309422 gagtagtgatatttgaacaactattttttacaactattatgacaacttcttttttttctctttctattag 6309353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 19246072 - 19246003
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||| ||||||||||||| |||| ||| |||| |||||| ||||||||| ||||||||    
T  19246072 aagagtagtgatatttaaacaaccatttttgacaactatcatgataacttccttttcctctctttctatt 19246003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 1033332 - 1033268
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    |||||||||||||||||||||||||||||  |||| | || ||||||||||||||| ||||||||    
T  1033332 aagagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctcttttt 1033268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 48372101 - 48372173
Alignment:
Q  27 aacttagttttaagagtagtgatatttgaacaaccattttttacaattatta-tgacaacttctttttcctct 98  Q
    |||||| ||||||||||||||||||||||||||| ||||  ||||||| ||| ||||||||||||||| ||||    
T  48372101 aacttatttttaagagtagtgatatttgaacaactatttcatacaatttttagtgacaacttcttttttctct 48372173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 38134164 - 38134094
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||||||| | || ||||||||    
T  38134164 taagagtagtgatatttaaacgaccatttttgacaactataatgacaacttcttttttccctctttctatt 38134094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 40983290 - 40983254
Alignment:
Q  62 attttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||||||||||||||||||||||||||||||    
T  40983290 attttttacaattattatgacaacttctttttcctct 40983254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 15596578 - 15596516
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    |||||||||||||||||||||||||||  |||| | || ||||||||||||||| ||| ||||    
T  15596578 gagtagtgatatttgaacaaccattttaaacaacttttgtgacaacttcttttttctcatttt 15596516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 36444280 - 36444346
Alignment:
Q  36 ttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    |||||||||||||||||||||||| ||| |  ||||||| || ||||||||||| ||| ||||||||    
T  36444280 ttaagagtagtgatatttgaacaatcatatgatacaattcttgtgacaacttctattttctcttttt 36444346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 38134359 - 38134400
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  38134359 tgatatttgaacaaccattttttacaatttttgtgacaactt 38134400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 31240836 - 31240772
Alignment:
Q  35 tttaagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttcctct 98  Q
    |||||||||||||||||||||||||||||||  ||||| || |  ||||||||||||||| ||||    
T  31240836 tttaagagtagtgatatttgaacaaccatttcatacaacttttggtgacaacttcttttttctct 31240772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 42915106 - 42915166
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||| ||||  ||||| | || ||||||||||||||| ||||    
T  42915106 aagagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctct 42915166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 23369407 - 23369356
Alignment:
Q  36 ttaagagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||| | ||||||||||||||||||||||||||| | || |||||||||    
T  23369407 ttaagagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 23369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 31275329 - 31275270
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||||||||||||||||||||||||||  ||||| | || |||||| |||||||| ||||    
T  31275329 agagtagtgatatttgaacaaccatttgatacaacttttgtgacaatttcttttttctct 31275270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 51389499 - 51389440
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    |||| ||||||||||||||||||||||  ||||| | || ||||||||||||||| ||||    
T  51389499 agagcagtgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctct 51389440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 6371498 - 6371440
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||| |||||| ||||  || |||| ||||||||||| ||||    
T  6371498 gagtagtgatatttgaacaacaatttttgacaaccatcatgataacttcttttttctct 6371440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 28481295 - 28481353
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    ||||| ||||||||||||||||||||| ||||   |||| |||| ||||||||||||||    
T  28481295 ttttatgagtagtgatatttgaacaactatttgagacaactattgtgacaacttctttt 28481353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 28482170 - 28482228
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    ||||| ||||||||||||||||||||| ||||   |||| |||| ||||||||||||||    
T  28482170 ttttatgagtagtgatatttgaacaactatttgagacaactattgtgacaacttctttt 28482228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 5622464 - 5622505
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  5622464 tgatatttgaacaaccattttttacaacttttgtgacaactt 5622505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 6953276 - 6953329
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttt 92  Q
    |||||||||||||||||||||||||| |||||| || |  ||||||||||||||    
T  6953276 gagtagtgatatttgaacaaccatttcttacaacttttggtgacaacttctttt 6953329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 9567580 - 9567613
Alignment:
Q  41 agtagtgatatttgaacaaccattttttacaatt 74  Q
    |||||||||||||||||||||||||| |||||||    
T  9567580 agtagtgatatttgaacaaccattttatacaatt 9567613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 37997262 - 37997303
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  37997262 tgatatttgaacaaccattttttacaacttttgtgacaactt 37997303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 38376556 - 38376515
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||| |||||||||||||| || |||||||||    
T  38376556 tgatatttgaacaatcattttttacaatttttttgacaactt 38376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 169541 - 169573
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  169541 tgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 2109475 - 2109443
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    ||||| |||||||||||||||||||||||||||    
T  2109475 tgtcaaaagatggttgtacaaatatcatttctc 2109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 10994191 - 10994223
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  10994191 tgtcacaaaatggttgtacaaatatcatttctc 10994223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 11063975 - 11064003
Alignment:
Q  37 taagagtagtgatatttgaacaaccattt 65  Q
    |||||||||||||||||||||||||||||    
T  11063975 taagagtagtgatatttgaacaaccattt 11064003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 13267517 - 13267549
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  13267517 tgtcacaaaatggttgtacaaatatcatttctc 13267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 28480427 - 28480479
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    ||||||||||||||||||||| ||||   |||| |||| ||||||||||||||    
T  28480427 gagtagtgatatttgaacaactatttgagacaactattgtgacaacttctttt 28480479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 30042166 - 30042134
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  30042166 tgtcacaaaatggttgtacaaatatcatttctc 30042134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 32365695 - 32365727
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  32365695 tgtcacaaaatggttgtacaaatatcatttctc 32365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 34259847 - 34259815
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  34259847 tgtcacaaaatggttgtacaaatatcatttctc 34259815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 39010176 - 39010208
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  39010176 tgtcacaaaatggttgtacaaatatcatttctc 39010208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 43168753 - 43168785
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  43168753 tgtcacaaaatggttgtacaaatatcatttctc 43168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 51359829 - 51359861
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  51359829 tgtcacaaaatggttgtacaaatatcatttctc 51359861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 54036557 - 54036589
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  54036557 tgtcacaaaatggttgtacaaatatcatttctc 54036589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 55960889 - 55960857
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccatttt 66  Q
    |||||||||||||||||||| ||||||||||||    
T  55960889 ttttaagagtagtgatattttaacaaccatttt 55960857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 9445287 - 9445231
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcct 96  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  9445287 gagtagtgatatttgaacaaccattttttacaactatcatgacaacttctttttcct 9445231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 17390821 - 17390756
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttc 103  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||||||||| |||||||||| ||||    
T  17390821 aagagtagtgatatttgaacaactatttttgacaactatcatgacaacttttttttcctctctttc 17390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 51866192 - 51866239
Alignment:
Q  42 gtagtgatatttgaacaaccattttttacaattattatgacaacttct 89  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  51866192 gtagtgatatttgaacaaccattttttacaactatcatgacaacttct 51866239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 23226301 - 23226369
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||| || ||||||||||||| |||||| | |||||| ||||||| ||||||||||||| ||||||||    
T  23226301 agagttgtcatatttgaacaactatttttgataattatcatgacaatttctttttcctctctttctatt 23226369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 8934421 - 8934484
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttt 101  Q
    |||||||||||||||||||||||||||| | ||||||  |||||||||||  |||| |||||||    
T  8934421 aagagtagtgatatttgaacaaccatttgtgacaatttctatgacaactttctttttctctttt 8934484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 27091460 - 27091527
Alignment:
Q  43 tagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctattagt 110  Q
    |||||||||| ||||||  ||||||||||| ||| ||||||| ||||||||||||| ||| |||||||    
T  27091460 tagtgatattcgaacaattattttttacaactatcatgacaatttctttttcctctctttttattagt 27091527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 2362551 - 2362489
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    ||||||||||||||||||||| ||||  ||||||| || ||||||||||||||  ||||||||    
T  2362551 gagtagtgatatttgaacaactatttgatacaatttttgtgacaacttcttttctctcttttt 2362489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 51571609 - 51571547
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttt 101  Q
    ||||| |||||||||||||||||||||  ||||| | || ||||||||||||||| |||||||    
T  51571609 agagttgtgatatttgaacaaccatttaatacaacttttgtgacaacttcttttttctctttt 51571547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7648433 - 7648364
Alignment:
Q  39 agagtagtgatatttgaacaaccatt-ttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||| ||||||||||||||||||| ||||| || ||| |||||||||| ||||| |||||||| ||||    
T  7648433 agagtaatgatatttgaacaaccatttttttataactatcatgacaactttttttttctctttttttatt 7648364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 47117888 - 47117843
Alignment:
Q  62 attttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||    
T  47117888 attttttataattattatgacaacttctcttttctctttttctatt 47117843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 45740430 - 45740486
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    ||||||||||||||||||||||| |||||   | |||| ||||||||||||||||||    
T  45740430 taagagtagtgatatttgaacaatcatttgaaataatttttatgacaacttcttttt 45740486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 2571641 - 2571684
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaacttct 89  Q
    ||||||||||||||||||||||||||| | || |||||||||||    
T  2571641 tgatatttgaacaaccattttttacaacttttgtgacaacttct 2571684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 33100804 - 33100855
Alignment:
Q  36 ttaagagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||| | ||||||||||||||||||||||||||| | || |||||||||    
T  33100804 ttaagagaaatgatatttgaacaaccattttttacaacttttttgacaactt 33100855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 41558178 - 41558128
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||||||||||||||| |||||||||| | |||| |||| |||||||||    
T  41558178 taagagtagtgatatttgtacaaccatttgtgacaactattgtgacaactt 41558128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 3159382 - 3159423
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  3159382 tgatatttgaacaaccattttttacaacttttgtgacaactt 3159423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 8350261 - 8350220
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  8350261 tgatatttgaacaaccattttttacaacttttgtgacaactt 8350220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 30735358 - 30735317
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  30735358 tgatatttgaacaaccattttttacaacttttgtgacaactt 30735317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 35369694 - 35369747
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||| | |||||||||||||| |||||||||||| | || |||||||||    
T  35369694 ttttaagagaaatgatatttgaacaatcattttttacaacttttgtgacaactt 35369747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 36230202 - 36230267
Alignment:
Q  46 tgatatttgaacaaccatttttta-caattattatgacaacttctttttcctctttttctattagt 110  Q
    ||||||||||||||| ||||| || ||||| ||||||||||||  |||| |||||||| |||||||    
T  36230202 tgatatttgaacaactattttctaacaatttttatgacaactttctttttctctttttttattagt 36230267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 37685337 - 37685378
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  37685337 tgatatttgaacaaccattttttacaacttttgtgacaactt 37685378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 37700181 - 37700140
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  37700181 tgatatttgaacaaccattttttacaacttttgtgacaactt 37700140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 6841973 - 6841909
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaac-ttctttttc-ctcttttt 102  Q
    ||||| ||||||||||||||| |||||| |||| ||| |||||||| ||||||||| ||||||||    
T  6841973 gagtactgatatttgaacaactatttttgacaactatcatgacaactttctttttctctcttttt 6841909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 9011677 - 9011645
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  9011677 tgtcacaaaatggttgtacaaatatcatttctc 9011645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 27687547 - 27687579
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  27687547 tgtcacaaaatggttgtacaaatatcatttctc 27687579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 28716328 - 28716300
Alignment:
Q  37 taagagtagtgatatttgaacaaccattt 65  Q
    |||||||||||||||||||||||||||||    
T  28716328 taagagtagtgatatttgaacaaccattt 28716300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 31427843 - 31427899
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    |||||||||||||||||||||||  |||||  |||| | ||||||||| ||||||||    
T  31427843 taagagtagtgatatttgaacaattattttaaacaacttttatgacaatttcttttt 31427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 39669838 - 39669806
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  39669838 tgtcacaaaatggttgtacaaatatcatttctc 39669806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 40596082 - 40596114
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  40596082 tgtcacaaaatggttgtacaaatatcatttctc 40596114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 40612146 - 40612114
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  40612146 tgtcacaaaatggttgtacaaatatcatttctc 40612114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 41507222 - 41507254
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  41507222 tgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 42256492 - 42256460
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  42256492 tgtcacaaaatggttgtacaaatatcatttctc 42256460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 48325806 - 48325838
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  48325806 tgtcacaaaatggttgtacaaatatcatttctc 48325838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 44086401 - 44086468
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||| ||||||| |||||||| |||| |||||| ||||||||| ||||||||    
T  44086401 gagtagtgatatttgaacaatcatttttgacaattatcatgataacttccttttcctctctttctatt 44086468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 39021338 - 39021399
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||| ||| ||||||||    
T  39021338 tgatatttgaacaaccatttttgacaactatcatgacaacttctttttcgtctatttctatt 39021399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 40413246 - 40413310
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||||||||||||  ||||| | |||||| ||||||||||| ||||    
T  40413246 ttttaagagtagtgatatttgaacaaccatttgatacaacttttatgataacttcttttttctct 40413310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 2520086 - 2520019
Alignment:
Q  41 agtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatta 108  Q
    |||||||||||||||||||| ||||| ||||| ||| |||| ||||| |||||||||| |||||||||    
T  2520086 agtagtgatatttgaacaactattttctacaactatcatgataacttatttttcctctctttctatta 2520019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 23258216 - 23258156
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||||||||   |||||| || ||||||||||||||| ||||    
T  23258216 aagagtagtgatatttgaacaaccatttgaaacaatttttgtgacaacttcttttttctct 23258156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 39027665 - 39027602
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||| || ||||| ||||||||    
T  39027665 agagcagtgatatttgaacaatcatttttgacaattatcatgacaaatttttttttctcttttt 39027602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 33415593 - 33415667
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattatta-tgacaacttctttttcctctttttctatt 107  Q
    ||||| |||||| ||||||| || |||||||||| |||| ||||| ||||||||||||||||| |||||| ||||    
T  33415593 ttttatgagtagcgatattttaaaaaccatttttgacaactattaatgacaacttctttttccactttttttatt 33415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 38128418 - 38128468
Alignment:
Q  43 tagtgatatttgaacaaccattttttacaattattatgacaacttcttttt 93  Q
    ||||||||||||||||||||||||  |||||| || |||||||||||||||    
T  38128418 tagtgatatttgaacaaccattttaaacaatttttgtgacaacttcttttt 38128468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 37101574 - 37101633
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattatt-atgacaacttctttttcctct 98  Q
    ||||||||||||||||||||||||||  ||||||| ||  ||||||||||||||| ||||    
T  37101574 gagtagtgatatttgaacaaccatttcatacaatttttcgtgacaacttcttttttctct 37101633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 30925541 - 30925575
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaa 72  Q
    ||||||||||||||||||||||||||||| |||||    
T  30925541 aagagtagtgatatttgaacaaccattttatacaa 30925575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 42659303 - 42659349
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaa 84  Q
    |||||||||||||||| ||||||||||||| |||| ||| |||||||    
T  42659303 aagagtagtgatatttaaacaaccatttttgacaactatcatgacaa 42659349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 27325764 - 27325805
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  27325764 tgatatttgaacaaccattttttacaacttttgtgacaactt 27325805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 28927864 - 28927811
Alignment:
Q  39 agagtagtgatatttgaacaaccattttttacaattattatgacaacttctttt 92  Q
    ||||| |||||||||||||||||||||  || |||| || ||||||||||||||    
T  28927864 agagtggtgatatttgaacaaccatttgataaaatttttgtgacaacttctttt 28927811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 42543363 - 42543428
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttctttttcctct 98  Q
    ||||||||||||||||| ||||||||||||||  ||||| || |  ||||||||||||||| ||||    
T  42543363 ttttaagagtagtgataattgaacaaccatttcatacaacttttggtgacaacttcttttttctct 42543428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 5502546 - 5502494
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattattatgacaacttctt 90  Q
    |||||||||||||||||||||| |||||  || |||| || ||||||||||||    
T  5502546 aagagtagtgatatttgaacaatcatttgatataatttttgtgacaacttctt 5502494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 6162127 - 6162063
Alignment:
Q  43 tagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||| ||||||||||||  |||||| |||| ||| ||||||||||| ||| ||||| ||||||||    
T  6162127 tagtcatatttgaacaataatttttgacaactatcatgacaacttcctttacctctctttctatt 6162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 11253605 - 11253577
Alignment:
Q  46 tgatatttgaacaaccattttttacaatt 74  Q
    |||||||||||||||||||||||||||||    
T  11253605 tgatatttgaacaaccattttttacaatt 11253577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 21273749 - 21273781
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  21273749 tgtcacaaaatggttgtacaaatatcatttctc 21273781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 38779202 - 38779134
Alignment:
Q  40 gagtagtgatatttgaacaac-cattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||| ||||||  ||||||  | ||||||||||||||| |||| ||| ||||    
T  38779202 gagtagtgatatttgaacaactcattttagacaatttatgtgacaacttcttttttctctatttttatt 38779134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 38844829 - 38844861
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  38844829 tgtcacaaaatggttgtacaaatatcatttctc 38844861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 43873730 - 43873762
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  43873730 tgtcacaaaatggttgtacaaatatcatttctc 43873762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 44068846 - 44068786
Alignment:
Q  47 gatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||| |||||| |||||| |||| ||| ||||||||||| |||| |||| ||||||||    
T  44068846 gatatttaaacaactatttttgacaactatcatgacaacttcctttttctctctttctatt 44068786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 44380653 - 44380685
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  44380653 tgtcacaaaatggttgtacaaatatcatttctc 44380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 17768104 - 17768041
Alignment:
Q  44 agtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||| ||||||||    
T  17768104 agtgatatttgaacatccatttttgacaactatgatgacaacttctttttcctctctttctatt 17768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 29173168 - 29173101
Alignment:
Q  43 tagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctattagt 110  Q
    ||||||||||||||||||| ||| | |||||||| |||||||||||||||| |||| |||||||||||    
T  29173168 tagtgatatttgaacaaccttttatgacaattatcatgacaacttcttttttctctctttctattagt 29173101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 32853033 - 32853095
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctcttttt 102  Q
    ||||||||||||||||||||| ||||  ||||||| || ||||||||||||||| ||||||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaatttttgtgacaacttcttttttctcttttt 32853095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 1688268 - 1688329
Alignment:
Q  47 gatatttgaacaaccatttttt-acaattattatgacaacttctttttcctctttttctatt 107  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||| ||||    
T  1688268 gatatttgaacaaccattttttgacaattatcttgacaacttctttttcctctctttttatt 1688329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 14803262 - 14803332
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctattagt 110  Q
    ||||| |||||||| |||||  |||||| |||| ||| |||||||||||| |||||||||||| |||||||    
T  14803262 gagtactgatatttaaacaattatttttgacaactatcatgacaacttctatttcctctttttttattagt 14803332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 25995624 - 25995557
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||| ||| ||||||||||||||||||| |||| ||  ||||||||||| |||| |||| ||||||||    
T  25995624 gagttgtgttatttgaacaaccatttttgacaactaccatgacaacttcatttttctctctttctatt 25995557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 26095087 - 26095020
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    |||| ||| ||||||||||||||||||| |||| ||  ||||||||||| |||| |||| ||||||||    
T  26095087 gagttgtgttatttgaacaaccatttttgacaactaccatgacaacttcatttttctctctttctatt 26095020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 237439 - 237469
Alignment:
Q  192 tcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||||||||||||||||||||||||||    
T  237439 tcacaagatggttgtacaaatatcatttctc 237469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 5570398 - 5570360
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaa 84  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  5570398 tgatatttgaacaaccattttttacaatttttgtgacaa 5570360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 22079637 - 22079587
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    |||||| | ||||||||||||||||||||||||||| | || |||||||||    
T  22079637 taagagaaatgatatttgaacaaccattttttacaacttttgtgacaactt 22079587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 25554417 - 25554383
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaa 72  Q
    |||||||||||||||||||||||||||||| ||||    
T  25554417 aagagtagtgatatttgaacaaccatttttgacaa 25554383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 8098660 - 8098619
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  8098660 tgatatttgaacaaccattttttacaacttttgtgacaactt 8098619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 14817938 - 14817979
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||| ||||||||||||| || |||||||||    
T  14817938 tgatatttgaacaactattttttacaatttttgtgacaactt 14817979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 25811903 - 25811862
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  25811903 tgatatttgaacaaccattttttacaacttttgtgacaactt 25811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 34047393 - 34047434
Alignment:
Q  46 tgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  34047393 tgatatttgaacaaccattttttacaacttttgtgacaactt 34047434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 3339538 - 3339570
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  3339538 tgtcacaaaatggttgtacaaatatcatttctc 3339570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 11785387 - 11785355
Alignment:
Q  190 tgtcacaagatggttgtacaaatatcatttctc 222  Q
    |||||||| ||||||||||||||||||||||||    
T  11785387 tgtcacaaaatggttgtacaaatatcatttctc 11785355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 24437630 - 24437559
Alignment:
Q  36 ttaagagtagtgatatttgaacaaccattttttacaattatt-atgacaacttctttttcctctttttctatt 107  Q
    ||||||||| | ||||||||||||||||||  || |||| || |||||||||| |||||||||||||| ||||    
T  24437630 ttaagagtaattatatttgaacaaccatttgatataatttttgatgacaactt-tttttcctctttttttatt 24437559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 18706 - 18643
Alignment:
Q  44 agtgatatttgaacaaccattttttacaattattatgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||| |||| |||||||| ||||    
T  18706 agtgatatttgaacaaccattttttacaactacgatgacaacttcatttttctctttttttatt 18643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 27524 - 27454
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaattatta-tgacaacttctttttcctctttttctatt 107  Q
    ||||||||||||||||||||||||||||  ||||||| ||| |||||| |||||||| |||| ||||||||    
T  27524 aagagtagtgatatttgaacaaccatttcatacaatttttagtgacaatttcttttttctctctttctatt 27454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 15067 - 15132
Alignment:
Q  29 cttagttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttc 94  Q
    ||||| |||||||||||||||||||||||||| ||||  ||||| | || ||||||||||||||||    
T  15067 cttagatttaagagtagtgatatttgaacaactatttggtacaacttttgtgacaacttctttttc 15132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 18191 - 18131
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaacttctttttc 94  Q
    ||||||||||||||||||||||||||| ||||  ||||| | |||||||||||| ||||||    
T  18191 ttttaagagtagtgatatttgaacaactatttgatacaacttttatgacaacttttttttc 18131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 49289 - 49342
Alignment:
Q  34 ttttaagagtagtgatatttgaacaaccattttttacaattattatgacaactt 87  Q
    ||||||||| | |||||||||||||||||||||||| || | ||||||||||||    
T  49289 ttttaagagaaatgatatttgaacaaccattttttataacttttatgacaactt 49342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 396047 - 396010
Alignment:
Q  37 taagagtagtgatatttgaacaaccattttttacaatt 74  Q
    |||||||||||||||||||||||||||||  |||||||    
T  396047 taagagtagtgatatttgaacaaccatttcatacaatt 396010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 11789 - 11817
Alignment:
Q  46 tgatatttgaacaaccattttttacaatt 74  Q
    |||||||||||||||||||||||||||||    
T  11789 tgatatttgaacaaccattttttacaatt 11817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 6999 - 6967
Alignment:
Q  40 gagtagtgatatttgaacaaccattttttacaa 72  Q
    ||||||||||||||||||||||||||| |||||    
T  6999 gagtagtgatatttgaacaaccattttatacaa 6967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 36186 - 36130
Alignment:
Q  38 aagagtagtgatatttgaacaaccattttttacaa-ttattatgacaacttcttttt 93  Q
    ||||||||||||||||||||||||||||  ||||| || || ||||||||| |||||    
T  36186 aagagtagtgatatttgaacaaccatttgatacaactttttgtgacaacttgttttt 36130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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