View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21107_low_56 (Length: 206)
Name: NF21107_low_56
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 44194092 - 44193927
Alignment:
| Q |
23 |
tccctccaaatttcgaatttcagatccatggctgcttcttcctccgatcctccttcacgacaccacacttacgaccgtaaacaaaaatcccttggcctct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44194092 |
tccctccaaatttcgaatttcagatccatggctgcttcctcctccgatcctccttcacgacaccacacttacgaccgtaaacaaaaatcccttggcctct |
44193993 |
T |
|
| Q |
123 |
tatgcaccaagtaagtgttactcttcttctattctctctctcacttaattcttttactcactaattat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44193992 |
tatgcaccaagtaagtgttactcttcttctattctc--tctcacttaattcttttactcactaattat |
44193927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 52359000 - 52359082
Alignment:
| Q |
50 |
atggctgcttcttcctccgatcctccttcacgacaccacacttacgaccgtaaacaaaaatcccttggcctcttatgcaccaa |
132 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| ||| | || ||||| |||||||| |
|
|
| T |
52359000 |
atggttgcttctttctccgatcctccttaacgacgccacaaatacgaccgtaaacaaaattccatcggtctcttgtgcaccaa |
52359082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University