View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_6 (Length: 592)
Name: NF21107_low_6
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 13397554 - 13398043
Alignment:
| Q |
18 |
gattatgtattagttattgttagcgggttgacaatccagcaactattgaatctgttttgttttgcttttgtatttgttataagttagaagatgaattttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
13397554 |
gattatgtattagttattgttagcgggttgacaatccagcaactattgaatctgttttgttttgcttttgtattcgttataagttagaagatgagttttc |
13397653 |
T |
|
| Q |
118 |
ctttggtaagtttcccaaaaaagaaattcattatatctagaatactctttatttggctggtttttgacaacattttaaacaaaacttaaacgtaatatcg |
217 |
Q |
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||| ||||| |||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13397654 |
cttaggtaattttcgcaaaa-agaaattcattatatctagaatactctttattggggtggtttttgacaacattttaaacaaaacttaaacgtaatatcg |
13397752 |
T |
|
| Q |
218 |
tccttaacatggcagttgaaagcggggaactaactatttagtgagcaaagtgatacatatcatatttcttcaaacttatattaattccatttacatataa |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13397753 |
tccttaacatggcagttgaaagcggggaactaactatttagtgagcaaagtaatacatatcatatttcttcaaacttatattaattccatttacatataa |
13397852 |
T |
|
| Q |
318 |
attttgttgctgatatatagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaatc |
417 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13397853 |
attttgttgctg----atagtatgcaggagtgatcctattaccgtatttagagcttggttatttatcaagaattgaagtataacgatatttttgcaaatt |
13397948 |
T |
|
| Q |
418 |
aatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattattgctaattatttatat |
512 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13397949 |
aatatatattgagtattcttgttctgcttctgtttagacctagtagtacatccatgttgattagggaagcaagaattattgctaattatttatat |
13398043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 276 - 461
Target Start/End: Complemental strand, 20374055 - 20373874
Alignment:
| Q |
276 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgatatatagtatgcaggagtgatcctattaccgtatttagagcttgg |
375 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| || |||||||| |||||||| |||||||| || | |
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|
| T |
20374055 |
atcatatttcttcaaacttatgttaattccatttacatcaaaattttgttgctgata----gtattcacgagtgatcttattaccgcatttagagatttg |
20373960 |
T |
|
| Q |
376 |
ttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagt |
461 |
Q |
| |
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||||||||||||||||||||| ||| ||||||| ||||||| ||||||| |||| |||||||||||||||||| |||||||||||| |
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| T |
20373959 |
ttatttatcaagaattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttgttctgcttgtttttagacctagt |
20373874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 276 - 515
Target Start/End: Original strand, 20407646 - 20407882
Alignment:
| Q |
276 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgatatatagtatgcaggagtgatcctattaccgt----atttagagc |
371 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| |||| | ||||||||||| ||||| | |||||||||||| ||| ||||||||| |
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| T |
20407646 |
atcatatatcttcaaacttatattaattgcatttacatctaaagtctgttgctgata----gtatgaatgagtgatcctataaccaaccacatttagagc |
20407741 |
T |
|
| Q |
372 |
ttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatcca |
471 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||| ||| |||||||||||| | ||||||||| | ||||| |||||||||| |||||| |
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|
| T |
20407742 |
ttggttctttatcaagaattgaagtataaagatagttttgcgaattaatatatattgaattttcttgttccgattgtgattagacctag---gtcatcca |
20407838 |
T |
|
| Q |
472 |
tgttgattagggaagcaagaattattgctaattatttatatgta |
515 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||| |||| |
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|
| T |
20407839 |
tgttgattagggaagcaagaattattactcattatttatgtgta |
20407882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 363 - 515
Target Start/End: Original strand, 20442357 - 20442506
Alignment:
| Q |
363 |
atttagagcttggttatttatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagta |
462 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||| ||||| |||| |||||||||||| |||||||||| | ||| ||||||| |||| |
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|
| T |
20442357 |
atttagagcttggttctttatcaagaattgaagtataaagatagttttgaaaattaatatatattgaatattcttgttgcgattgggtttagatctag-- |
20442454 |
T |
|
| Q |
463 |
atacatccatgttgattagggaagcaagaattattgctaattatttatatgta |
515 |
Q |
| |
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| |||||||||||||||||||||||||||||||| || ||||||||| |||| |
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|
| T |
20442455 |
-tgcatccatgttgattagggaagcaagaattattactcattatttatgtgta |
20442506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 381 - 519
Target Start/End: Complemental strand, 20140299 - 20140164
Alignment:
| Q |
381 |
tatcaagaattgaagtataaggatatttttgcaaatcaatatatattgagtattcttgttctgcttgtgtttagacctagtaatacatccatgttgatta |
480 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||| ||| ||||| |||| ||| |||| ||||||||||||||| ||||||||| |||||||| |
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|
| T |
20140299 |
tatcaataattgaactataaagatatttttgcaaattaatgcatattcgatattattgctctgattgtgtttagaccta---atacatccacgttgatta |
20140203 |
T |
|
| Q |
481 |
gggaagcaagaattattgctaattatttatatgtatact |
519 |
Q |
| |
|
||||| ||||||||||| || ||||||||| | |||||| |
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| T |
20140202 |
gggaaccaagaattattactgattatttatttctatact |
20140164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 20374136 - 20374083
Alignment:
| Q |
225 |
catggcagttgaaagcggggaactaactatttagtgagcaaagtgatacatatca |
279 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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|
| T |
20374136 |
catggcagttgaaagcggggaactcactatttagtgagc-aagtgatacaaatca |
20374083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 20423360 - 20423433
Alignment:
| Q |
433 |
ttcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattattgctaattattta |
509 |
Q |
| |
|
||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||| |
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|
| T |
20423360 |
ttcttgttccgattgtgtttagacatagta---catccatgttgattggggaagcaagaattattactcattattta |
20423433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 20133024 - 20132961
Alignment:
| Q |
431 |
tattcttgttctgcttgtgtttagacctagtaatacatccatgttgattagggaagcaagaattatt |
497 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||| || |||||||||||||||||||||| |
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|
| T |
20133024 |
tattattgttctgattgtgtttagacctagta---catccacgtagattagggaagcaagaattatt |
20132961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 20140456 - 20140396
Alignment:
| Q |
135 |
aaaaagaaattcattatatctagaatactctttatttggctggtttttgacaacattttaa |
195 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| || | | ||||||||||||||||| |
|
|
| T |
20140456 |
aaaaagaaattcaatatatttagaatactctttattaggttagattttgacaacattttaa |
20140396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 20407543 - 20407596
Alignment:
| Q |
279 |
atatttcttcaaacttatattaattccatttacatataaattttgttgctgata |
332 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| | || |||||||| |
|
|
| T |
20407543 |
atatatcttcaaacttatattaattccatttacatctaaagtctgctgctgata |
20407596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 20423172 - 20423225
Alignment:
| Q |
279 |
atatttcttcaaacttatattaattccatttacatataaattttgttgctgata |
332 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| |||| | ||||||||||| |
|
|
| T |
20423172 |
atatatcttcaaacttatattaattccattaacatctaaagtctgttgctgata |
20423225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 20423275 - 20423331
Alignment:
| Q |
276 |
atcatatttcttcaaacttatattaattccatttacatataaattttgttgctgata |
332 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| | || | ||||||||||| |
|
|
| T |
20423275 |
atcatatatcttcaaacttatagtaattccatttacatctgaagtatgttgctgata |
20423331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 309
Target Start/End: Complemental strand, 29820662 - 29820633
Alignment:
| Q |
280 |
tatttcttcaaacttatattaattccattt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29820662 |
tatttcttcaaacttatattaattccattt |
29820633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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