View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_7 (Length: 570)
Name: NF21107_low_7
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 4388404 - 4387972
Alignment:
| Q |
18 |
atagatcccatgaagagtaaaccgaaacagtgacacttgctttattgttttttccttgagatgcatgtaagtattttcgtaagatttatgtgacataagc |
117 |
Q |
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| T |
4388404 |
atagatcccatgaagagtaaaccgaaacagtgacacttgctttattgttttttccttgagatg----taagtattttcgtaagatttatgtgacataagc |
4388309 |
T |
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| Q |
118 |
ttggatgattattatcgataaacaaagcacaagttcgaattctggtgggaacaattctttgctaagctttacttaactttcggtagaacttcttaattac |
217 |
Q |
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| T |
4388308 |
ttggatgattattatcgataaacaaagcacaagtccgaattctggtgggaacaattctttgctaagctttacttaactttcggtagaacttcctaattac |
4388209 |
T |
|
| Q |
218 |
taggagcccccttcccctaggaaccggaagcttaacacacnnnnnnnnnttaaaattcttccgcccaccaaacacttctttgtgttttatgggtgcctct |
317 |
Q |
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| T |
4388208 |
taggagcccccttcccctaggaaccggaagcttaacaca--aaaaaaaattaaaattcttccgcccaccaaacacttctttgtgtgttatgggtgcctc- |
4388112 |
T |
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| Q |
318 |
tttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctctgccttcctttgtgactccaatcaaacaatttgttgaatcatggagaaagc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4388111 |
tttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctctgccttcctttgtgactccaatcaaacaatttgtttaatcatggagaaagc |
4388012 |
T |
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| Q |
418 |
aaaacatagtaagccgaggaacaagttctttacagaagca |
457 |
Q |
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| T |
4388011 |
aaaacatagtaagccgaggaacaagttctttacagaagca |
4387972 |
T |
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