View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_8 (Length: 539)
Name: NF21107_low_8
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8644859 - 8645075
Alignment:
| Q |
18 |
caagttaaggaaatatatatttcttggtcacctaatcttatttattggctagtgaataacctccaagtacctatactatctatattattgtggtctggct |
117 |
Q |
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| T |
8644859 |
caagttaaggaaatatatatttcttggtcacctaatcttatttattggctagtgaataacctgcaaatacctatactatctatattattgtggtctggct |
8644958 |
T |
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| Q |
118 |
tactattcattcacaacggaccaatgattcgtatcacggacagaataggtatagtaatttataagacagaggtgacagatggaagctagtaaataataaa |
217 |
Q |
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| T |
8644959 |
tactattcattcacaacggaccaatgattagtatcacggacagaataggaatggtaatttataagac--aggtggcagatggaagctagtaaataataaa |
8645056 |
T |
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| Q |
218 |
gggttgtcaaatattaaca |
236 |
Q |
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| T |
8645057 |
gggttgtcaaatattaaca |
8645075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 405 - 511
Target Start/End: Original strand, 8645344 - 8645447
Alignment:
| Q |
405 |
acggtgacttttcaatctaatagtaactatttgtaaaacatcctcacacgtaagtgtatagtttttaaatgcaattaattttgtcttacattaattacat |
504 |
Q |
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| T |
8645344 |
acggtgacttttcaatccaata---actatttgtaaaacatcctcacacgtaagtgtatagtttttaaatgcaattaattttgtcttacattaattacat |
8645440 |
T |
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| Q |
505 |
atttgta |
511 |
Q |
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| T |
8645441 |
atttgta |
8645447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 8645101 - 8645164
Alignment:
| Q |
276 |
ctttattatattattgaacacaaataatattttatctcaagaggaagaattatattatgaaata |
339 |
Q |
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| T |
8645101 |
ctttattatattattgaacacaaataatattttatctcaagaggaagaattatattatgaaata |
8645164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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