View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_9 (Length: 518)
Name: NF21107_low_9
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 47219803 - 47219596
Alignment:
| Q |
11 |
cacagaagaagaagtgatgaccatgatttgttatctttatggtgtcatttccagtggtgaatgttgctataggtgatgatgcattgcatgacttgtacat |
110 |
Q |
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| T |
47219803 |
cacagaagaagaagtgatgaccatgatttgttatctttatggtgtcatttccagtggtgaatgttgctataggtgatgatgcattgcatgacttgtacat |
47219704 |
T |
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| Q |
111 |
ggcatgtgtcactcgcatcacattgtggaattttgcactatattcaaatactgaaatatagtattacaaattaatgcacttgtcaatttgagttaacatt |
210 |
Q |
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| T |
47219703 |
ggcatgtgtcactcgcatcacattgtggaattttgcactatattcaaatactgaaatatagtagtacaaattaatgcacttgtcaatttgagttaacatt |
47219604 |
T |
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| Q |
211 |
catctaaa |
218 |
Q |
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|||||||| |
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| T |
47219603 |
catctaaa |
47219596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 259 - 507
Target Start/End: Original strand, 34528290 - 34528525
Alignment:
| Q |
259 |
cttcaaaaacccttaattttggcatgattgtgctaaacaattttcaatgaagtaatccaagaaaatgaagtgaaaatgaagtaggaagagggagataaaa |
358 |
Q |
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| T |
34528290 |
cttcaaaaacccttaattttggcatcattgggctaaacaattttcaatgaagtaatccgagaaaatgaagtgaaaatgaagtaggaagatggagataaaa |
34528389 |
T |
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| Q |
359 |
acatgtaccgtagtgaaagtcctgaaatgcatgtccatgtttcttcttctgatgatgaagaagaagagatcatccccaaccatagtttcttcataagagt |
458 |
Q |
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| T |
34528390 |
acatgtaccgtagtgaaatcccaaaaatgcatgtcgatgtttct-----------tgaagaagaagaaatcatcgccaaccatagtttcttcataagag- |
34528477 |
T |
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| Q |
459 |
tttcttttgatggtttctttgattactcttttgcattctgacactctct |
507 |
Q |
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|| | ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34528478 |
-ttgtgttgatggtttctttgattactcttttgcattctaacactctct |
34528525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 34519194 - 34519244
Alignment:
| Q |
349 |
ggagataaaaacatgtaccgtagtgaaagtcctgaaatgcatgtccatgtt |
399 |
Q |
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| T |
34519194 |
ggagattaaaacatgtaccttagtgaaagccctgaagtgcatgtgcatgtt |
34519244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 45403276 - 45403304
Alignment:
| Q |
392 |
tccatgtttcttcttctgatgatgaagaa |
420 |
Q |
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| T |
45403276 |
tccatgtttcttcttctgatgatgaagaa |
45403304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 738658 - 738789
Alignment:
| Q |
11 |
cacagaagaagaagtgatgaccatgatttgttatctttatggtgtcatttccagtggtgaatgttgctataggtgatgatgcattgcatgacttgtacat |
110 |
Q |
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|||| ||||| || |||||||||| ||||||||||||||||| ||| || ||||||| ||| |||| || ||| |||||| ||||||||||||||||||| |
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| T |
738658 |
cacacaagaaaaaatgatgaccataatttgttatctttatggagtctttgccagtggagaaggttgttaaaggggatgatccattgcatgacttgtacat |
738757 |
T |
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| Q |
111 |
ggcatgtgtcactcgcatcacattgtggaatt |
142 |
Q |
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| T |
738758 |
agcgtgtgtcacacgcatcacattgtggaatt |
738789 |
T |
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