View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21108_high_12 (Length: 231)

Name: NF21108_high_12
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21108_high_12
NF21108_high_12
[»] chr4 (4 HSPs)
chr4 (17-133)||(22200583-22200699)
chr4 (146-194)||(22200723-22200771)
chr4 (195-231)||(22200807-22200843)
chr4 (68-99)||(22322146-22322177)
[»] chr3 (1 HSPs)
chr3 (150-187)||(55337595-55337632)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 22200583 - 22200699
Alignment:
Q  17 atttttataatttacctcaaagtttgagtaatgtttctcnnnnnnnatatattgatttatgtttctctcgtatcaaaaacaacaatatccttgtatattt 116  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22200583 atttttataatttacctcaaagtttgagtaatgtttctctttttttatatattgatttatgtttctctcgtatcaaaaacaacaatattcttgtatattt 22200682  T
Q  117 atagctaccttgataaa 133  Q
    |||||||||||||||||    
T  22200683 atagctaccttgataaa 22200699  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 22200723 - 22200771
Alignment:
Q  146 gagacatatcaagtgtgaggaataattataatgagagatgaggatcatt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22200723 gagacatatcaagtgtgaggaataattataatgagagatgaggatcatt 22200771  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 22200807 - 22200843
Alignment:
Q  195 tggcaattgacagtagttggatcatttggcaattgac 231  Q
    |||||||||||||||||||||||||||||||||||||    
T  22200807 tggcaattgacagtagttggatcatttggcaattgac 22200843  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 99
Target Start/End: Original strand, 22322146 - 22322177
Alignment:
Q  68 ttgatttatgtttctctcgtatcaaaaacaac 99  Q
    ||||||||||||||||||||||||||||||||    
T  22322146 ttgatttatgtttctctcgtatcaaaaacaac 22322177  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 55337632 - 55337595
Alignment:
Q  150 catatcaagtgtgaggaataattataatgagagatgag 187  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  55337632 catatcaagtgagaggagtaattataatgagagatgag 55337595  T

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