View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21108_high_13 (Length: 229)
Name: NF21108_high_13
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21108_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 1228750 - 1228564
Alignment:
| Q |
4 |
tcacaagaagatcagagatgacaacacaacactacactatactacatacgtatacagttgggaagagtgaaggaagggagatagttatataaatatatga |
103 |
Q |
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| T |
1228750 |
tcacaagaagatcagagatgacaacac-----tacactatactacatacgtatacagttgggaagagtgaaggaagggagatagttatataaatatatga |
1228656 |
T |
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| Q |
104 |
ctaagtcatcatccaataaaaaaggcattaattaaattatttacaaatagtggaggagagtgaaaaagtaggtctaaatctttatttctctg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228655 |
ctaagtcatcatccaataaaaaaggcattaattaaattatttacaaatagtggaggagagtgaaaaagtaggtctaaatctttatttctctg |
1228564 |
T |
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