View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21108_high_2 (Length: 580)

Name: NF21108_high_2
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21108_high_2
NF21108_high_2
[»] chr5 (2 HSPs)
chr5 (6-567)||(17783666-17784225)
chr5 (170-221)||(30970755-30970806)
[»] chr8 (3 HSPs)
chr8 (164-259)||(34391061-34391156)
chr8 (167-252)||(6429449-6429534)
chr8 (196-287)||(30869734-30869825)
[»] chr7 (2 HSPs)
chr7 (191-290)||(22341119-22341218)
chr7 (224-290)||(5873644-5873710)
[»] chr4 (1 HSPs)
chr4 (170-286)||(23971594-23971710)
[»] chr1 (1 HSPs)
chr1 (164-254)||(22059875-22059965)
[»] chr3 (2 HSPs)
chr3 (172-252)||(7808387-7808467)
chr3 (164-248)||(26255460-26255544)


Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 6 - 567
Target Start/End: Original strand, 17783666 - 17784225
Alignment:
Q  6 ccaactagaacacctatgtattctgctccaaaataatgtgagcattatgagatctctacaaggaccacataataattttccacgttnnnnnnnttcaacc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||       |||||||    
T  17783666 ccaactagaacacctatgtattctgctccaaaataatgtgagcattatgagatctctacaagaaccacataatgattttccacgttaaaaaaattcaacc 17783765  T
Q  106 tcgnnnnnnnnatgcacctaattctaacataatactaagaagatgtagcgatgactacatctggaggtaaaacaaactcccacctcaactacctaagcac 205  Q
    |||         ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17783766 tcgttttttttctgcacctaattctaatataatactaagaagatgcagcgatgactacatctggaggtaaaacaaactcccacctcaactacctaagcac 17783865  T
Q  206 atgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaagaagtatctccagttgcc 305  Q
    ||||||||||||| || ||||||||||| ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  17783866 atgataccacatccgacctaaaaaatgacatctagcaaaaaagtgacaagccgattcatgatgctcattacagaaaacacaagaagtatctccaattgcc 17783965  T
Q  306 acgaaaaaaccttcaccttgaaatgagactaagacagtaagactctcactcacttaaaagaagccgaacaagctacactatcagagattttcctatcaat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17783966 acgaaaaaaccttcaccttgaaatgagactaagacagtaagactctcacacacttgaaagaagccgaacaagctacactatcagagattttcctatcaat 17784065  T
Q  406 catcaccactacaagtcttgttaaacaatctttcagtcgaattacctgcannnnnnnctctcattaaatttataaaaataattcattcaaaagactataa 505  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||        | ||||||||||||||||||||||||||||||||||||||||    
T  17784066 catcaccactacaagtcttgttaaacaatctttcagtctaagtacctgcatttttt--tgtcattaaatttataaaaataattcattcaaaagactataa 17784163  T
Q  506 aacattgacgggaatataaaattgttgcagaaatataataaatatattaaaacgtcattttc 567  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17784164 aacattgacgggaatataaaatcgttgcagaaatataataaatatattaaaacgtcattttc 17784225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 30970755 - 30970806
Alignment:
Q  170 aggtaaaacaaactcccacctcaactacctaagcacatgataccacatctga 221  Q
    ||||||||| |||||||||| ||||||||||| |||||||||| ||| ||||    
T  30970755 aggtaaaactaactcccaccccaactacctaaacacatgatactacacctga 30970806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 34391156 - 34391061
Alignment:
Q  164 atctggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccga 259  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||   |||||||| || | ||| |||||||||||||| ||||    
T  34391156 atctgaaggtaaaacaaactcccaccccaaccacctaagcacatgataccacacctagcctaaaaaaggacaactaacaaaaaggtgactaaccga 34391061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 6429449 - 6429534
Alignment:
Q  167 tggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgac 252  Q
    |||||||||||||||||| | || |||| ||||||||||| ||||||||| ||||  |||||||||| ||||| ||||||||||||    
T  6429449 tggaggtaaaacaaactctccccccaaccacctaagcacacgataccacacctgacttaaaaaatgacatctagcaaaaaggtgac 6429534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 30869825 - 30869734
Alignment:
Q  196 acctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaa 287  Q
    |||||| |||||| ||||||| |||| ||||||| ||| ||||| |||||||||||| |||| | || | |  ||||||||| |||||||||    
T  30869825 acctaaacacatgctaccacacctgacctaaaaactgacatctaacaaaaaggtgacaagccaactctacactctcattacaaaaaacacaa 30869734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 22341218 - 22341119
Alignment:
Q  191 caactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaagaa 290  Q
    ||||||| |||||||||||||||| | ||||||||||||| || ||||| |||||| ||||| | |||| || | | |||||||| ||||||||||||||    
T  22341218 caactacataagcacatgataccatacctgatctaaaaaaggacatctaacaaaaatgtgacaacccgactctataggctcattatagaaaacacaagaa 22341119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 5873644 - 5873710
Alignment:
Q  224 taaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaagaa 290  Q
    |||||||||| ||||| ||||||||||| ||| ||| || |||  ||||||| ||||||||||||||    
T  5873644 taaaaaatgacatctaacaaaaaggtgattagtcgactctagaaactcattatagaaaacacaagaa 5873710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 23971710 - 23971594
Alignment:
Q  170 aggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgc 269  Q
    ||||||||||||||| |||| ||||  || || |||||||||||||| ||| |||||||||||  ||||| |||||| ||||| | || | |  | ||||    
T  23971710 aggtaaaacaaactctcaccccaacctccaaaacacatgataccacacctggtctaaaaaatggtatctaacaaaaacgtgacaaaccaactatacatgc 23971611  T
Q  270 tcattacagaaaacaca 286  Q
    |||||||||||||||||    
T  23971610 tcattacagaaaacaca 23971594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 22059965 - 22059875
Alignment:
Q  164 atctggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgacta 254  Q
    ||||| |||||||| |||||| |||| |||| ||| || |||||||||||||| ||   || |||||||| ||||| ||||||||||||||    
T  22059965 atctgaaggtaaaataaactctcaccccaaccacccaaacacatgataccacacctcgccttaaaaatgacatctaacaaaaaggtgacta 22059875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 7808387 - 7808467
Alignment:
Q  172 gtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgac 252  Q
    |||||||||| ||||||| |||||| |||| |||||||||| |||  |   |||||||| || ||||||||||||||||||    
T  7808387 gtaaaacaaattcccaccccaactatctaaacacatgatacaacacttagcctaaaaaaggacatctaccaaaaaggtgac 7808467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 26255460 - 26255544
Alignment:
Q  164 atctggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaagg 248  Q
    ||||| ||||||||||||| |||||| |||| | |||| ||||||||||||||  ||| | |||||| || ||||| ||||||||    
T  26255460 atctgaaggtaaaacaaacacccaccccaaccatctaaacacatgataccacacttgacccaaaaaaggacatctaacaaaaagg 26255544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University