View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21108_high_3 (Length: 430)
Name: NF21108_high_3
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21108_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 115 - 413
Target Start/End: Complemental strand, 44223357 - 44223060
Alignment:
| Q |
115 |
tgtagctagatacttgtggttacgtgtcttcttaattcattttacnnnnnnngtgcgatgagtctcactgtctcagggagaagatgagacgtaaagtaaa |
214 |
Q |
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| T |
44223357 |
tgtagctagatacttgtggttacgtgtctttttagttcattttactttttttgtgcgatgagtctcactgtctcagggagaagatgagacgtaaagtaaa |
44223258 |
T |
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| Q |
215 |
atggtattggtagacatgatgaaattggtttgtcaagttgttacatgctgcttttatacatacnnnnnnnnnnnnnnnntccctaaagatgaatttcaac |
314 |
Q |
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| T |
44223257 |
atggtattgatagacatgatgaaattggtttgtcaagttgttacatgctgcttttatacatac-aaaaaaaaaaaaaaatccctaaagatgaatttcaac |
44223159 |
T |
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| Q |
315 |
aaatatctccctagctagttgaatttcaaccagcaaaccatttctaaagatgcaataatttcatagcagatattagcttctaaaaaagcacccagaatc |
413 |
Q |
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| T |
44223158 |
aaatatctccctagctagttgaatttcaaccagcaaaccatttctaaagatgcaataatttcatagcagatattagcttctaaaaaagcacccagaatc |
44223060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 44223438 - 44223399
Alignment:
| Q |
33 |
catattaaataagatcgttttgttatgatgtagccatcgt |
72 |
Q |
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| T |
44223438 |
catattaaataagatcgttttgttatgatgtagccatcgt |
44223399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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