View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21108_high_4 (Length: 361)
Name: NF21108_high_4
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21108_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 47852032 - 47852365
Alignment:
| Q |
20 |
cagaatgtttatgatgtctcataatcatatagtagccacaaagattaaacgattatggtataatactacctgataacccaaatcactggcaatttcaatg |
119 |
Q |
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| T |
47852032 |
cagaatgtttatgatgtctcataatcataaagtagccacaaagattaaacgattatggtataatactacctgataacccaaatcactgccaatttcaatg |
47852131 |
T |
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| Q |
120 |
acactttttcttgtgattccggaaagtatggttccactgatagcaggcgttgaaatggttttgccctaagaaattgaaatccaagttagatcgagatcgt |
219 |
Q |
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| T |
47852132 |
acactttttcttgtgattccggaaagtatggttccactgatagcaggcgttgaaatggttttgccctaagaaattgaaatccaagttagattgagatcgt |
47852231 |
T |
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| Q |
220 |
ttgaccagttgcaaatataacagatagaatatagtacatattgagtttcaccaaatcagttagaacatgcacaactaggaaagtaacaattcatgcgatt |
319 |
Q |
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| T |
47852232 |
ttgaccagttgcaaatataacagatagaatatagtacatattgagtttcaccaaatcagttagaacatgcacaactaggaaagtaacaattcatgcgatt |
47852331 |
T |
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| Q |
320 |
atccgaaaaccagaatttaaataaaccctatgct |
353 |
Q |
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| T |
47852332 |
atccgaaaaccagaatttaaataaaccctatgct |
47852365 |
T |
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