View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21108_high_8 (Length: 249)

Name: NF21108_high_8
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21108_high_8
NF21108_high_8
[»] chr4 (13 HSPs)
chr4 (11-249)||(1227928-1228166)
chr4 (19-106)||(9242917-9243003)
chr4 (11-72)||(33161827-33161886)
chr4 (8-72)||(53265990-53266052)
chr4 (17-72)||(31823044-31823099)
chr4 (11-72)||(12572565-12572624)
chr4 (11-72)||(36174400-36174459)
chr4 (15-76)||(21713159-21713220)
chr4 (18-106)||(27761127-27761214)
chr4 (17-73)||(42039049-42039105)
chr4 (14-73)||(32935719-32935778)
chr4 (17-76)||(38131470-38131529)
chr4 (11-72)||(47043809-47043868)
[»] scaffold0217 (1 HSPs)
scaffold0217 (19-106)||(25601-25688)
[»] chr1 (10 HSPs)
chr1 (113-203)||(39650193-39650284)
chr1 (19-86)||(20447188-20447255)
chr1 (19-86)||(20532951-20533018)
chr1 (17-73)||(41871767-41871823)
chr1 (11-72)||(39650396-39650455)
chr1 (20-104)||(1671324-1671408)
chr1 (17-73)||(46178675-46178731)
chr1 (17-73)||(48566792-48566848)
chr1 (11-77)||(50065656-50065720)
chr1 (14-106)||(21482908-21482999)
[»] chr2 (11 HSPs)
chr2 (50-134)||(37891739-37891823)
chr2 (11-72)||(12967418-12967477)
chr2 (17-73)||(29908537-29908593)
chr2 (14-73)||(29132628-29132687)
chr2 (11-72)||(22495894-22495953)
chr2 (120-200)||(31133179-31133260)
chr2 (19-73)||(6903714-6903767)
chr2 (118-194)||(11712964-11713041)
chr2 (113-201)||(18394960-18395049)
chr2 (113-150)||(37891673-37891710)
chr2 (113-200)||(2154262-2154350)
[»] chr7 (10 HSPs)
chr7 (19-106)||(8260882-8260969)
chr7 (46-134)||(30362750-30362838)
chr7 (113-201)||(30362867-30362956)
chr7 (128-200)||(2355485-2355558)
chr7 (124-200)||(20379669-20379746)
chr7 (18-73)||(41219372-41219427)
chr7 (113-151)||(1537236-1537274)
chr7 (11-80)||(26502251-26502318)
chr7 (11-80)||(26590396-26590463)
chr7 (128-200)||(28138759-28138832)
[»] scaffold0753 (1 HSPs)
scaffold0753 (19-106)||(4001-4088)
[»] scaffold1455 (1 HSPs)
scaffold1455 (11-80)||(195-262)
[»] chr8 (5 HSPs)
chr8 (17-73)||(34471589-34471645)
chr8 (113-202)||(4640785-4640875)
chr8 (17-90)||(2766858-2766931)
chr8 (113-192)||(37686624-37686704)
chr8 (17-73)||(3964043-3964099)
[»] chr3 (12 HSPs)
chr3 (46-134)||(47068150-47068238)
chr3 (11-72)||(2325432-2325491)
chr3 (17-108)||(25574827-25574917)
chr3 (17-72)||(39415381-39415436)
chr3 (11-72)||(42947563-42947622)
chr3 (11-72)||(44833623-44833682)
chr3 (17-73)||(6755711-6755767)
chr3 (22-106)||(49303211-49303295)
chr3 (118-200)||(42947375-42947458)
chr3 (123-201)||(53827661-53827740)
chr3 (155-202)||(54525800-54525847)
chr3 (17-73)||(48086877-48086933)
[»] chr5 (10 HSPs)
chr5 (14-73)||(10532827-10532886)
chr5 (113-202)||(1974154-1974244)
chr5 (17-73)||(28784766-28784822)
chr5 (11-72)||(3461404-3461463)
chr5 (15-73)||(6427318-6427376)
chr5 (11-72)||(19401820-19401879)
chr5 (155-200)||(7336117-7336162)
chr5 (117-200)||(11135741-11135825)
chr5 (17-73)||(41758708-41758764)
chr5 (34-106)||(43147438-43147510)
[»] chr6 (8 HSPs)
chr6 (113-200)||(14153354-14153442)
chr6 (19-73)||(2419794-2419848)
chr6 (13-72)||(14153552-14153609)
chr6 (113-152)||(16444318-16444357)
chr6 (11-72)||(16444465-16444524)
chr6 (17-106)||(13312589-13312677)
chr6 (17-73)||(319259-319315)
chr6 (123-202)||(35060895-35060975)
[»] scaffold1763 (1 HSPs)
scaffold1763 (155-200)||(397-442)
[»] scaffold1063 (1 HSPs)
scaffold1063 (123-202)||(1473-1553)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 1227928 - 1228166
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcacactt 110  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  1227928 cacagaccaaaaaacgtttgttcttcagttctgaccaccggccaactagtgtgagttaactcgtgctaaggctcaatggtgggtgacttaagtcacactt 1228027  T
Q  111 agaatacactagcgcatgttaagttgcgcaggggcattttggcctttactttaggaatgagcgaaataatttaggtaaagagcataattcaagaactatt 210  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||| || ||||||||||||| ||||| |||||| | || ||||||||||| |||    
T  1228028 agaatacactagcgcatgttaagttgcgcagaggcattttgaactttaccttgggaatgagcgaaacaatttgggtaaataacagaattcaagaaccatt 1228127  T
Q  211 aagagtgctaaaatgggttagtttgatatgggcttacat 249  Q
    | |||||||||||||||||||||||||||||||||||||    
T  1228128 aggagtgctaaaatgggttagtttgatatgggcttacat 1228166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 9242917 - 9243003
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    |||||||||| ||||||||||||| || ||||||||||| | ||||||||||||| |  |||||||||||||  ||| ||||||||||    
T  9242917 aaaaaacgtttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcg-gaaggctcagtggtgcgtgacttaagtcac 9243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 33161886 - 33161827
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||||||||||   |||||||||||||| ||||||||||||    
T  33161886 cacagaccaaaaaacgtttgttcttcagttct--gcaccggccaactagcgtgagttaactc 33161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 53266052 - 53265990
Alignment:
Q  8 gatcacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    ||||||| ||||||||||||| |||||||||||||   |||||||||||||| ||||||||||||    
T  53266052 gatcacaaaccaaaaaacgtttgttcttcagttct--gcaccggccaactagcgtgagttaactc 53265990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 31823099 - 31823044
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||| ||||||||||||| |||||||||||||  | ||||||||||||    
T  31823099 ccaaaaaacgtttgttcttcagttctgaccaccggccaacgtgcgtgagttaactc 31823044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 12572624 - 12572565
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||||||||||   |||||||||||| | ||||||||||||    
T  12572624 cacagaccaaaaaacgtttgttcttcagttct--gcaccggccaactggcgtgagttaactc 12572565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 36174400 - 36174459
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    ||||||||||||||||||  ||||||||||||   |||| ||||||||||||||||||||||    
T  36174400 cacagaccaaaaaacgtttcttcttcagttct--gcacctgccaactagtgtgagttaactc 36174459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 21713159 - 21713220
Alignment:
Q  15 gaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgc 76  Q
    |||||||||||||| ||||||||| ||| |||||||||||  | | ||||||||||||||||    
T  21713159 gaccaaaaaacgtttgttcttcagctctgaccaccggccatgttgcgtgagttaactcgtgc 21713220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 27761127 - 27761214
Alignment:
Q  18 caaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    ||||||||||| |||||| |||||| || ||||||||||  ||||||||||||||| ||  ||||| ||||||  ||| ||||||||||    
T  27761127 caaaaaacgtttgttcttgagttctgactaccggccaacgtgtgtgagttaactcgcgcataggct-agtggtgcgtgacttaagtcac 27761214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 42039105 - 42039049
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||  ||||||||||||| |||||||||||||  | |||||||||||||    
T  42039105 ccaaaaaacgtctgttcttcagttctgaccaccggccaacgtgcgtgagttaactcg 42039049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 32935778 - 32935719
Alignment:
Q  14 agaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||  | |||||||||||||    
T  32935778 agaccaaaaaacgtttgttcttcagctctggccaccggccaacgtgcgtgagttaactcg 32935719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 38131529 - 38131470
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgc 76  Q
    |||||||||||| ||||||||||| | ||||||||| |||  | ||||||||||||||||    
T  38131529 ccaaaaaacgtttgttcttcagttgtgaccaccggctaacgtgcgtgagttaactcgtgc 38131470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 47043809 - 47043868
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||||||||||   |||||||||||| | | ||||||||||    
T  47043809 cacagaccaaaaaacgtttgttcttcagttct--gcaccggccaactggcgcgagttaactc 47043868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 25688 - 25601
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    |||||||||| ||||||||||||| |||||||||||||| | ||||||||||||| || ||||||  |||||| ||||||||||||||    
T  25688 aaaaaacgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctgggtggtacgtgccttaagtcac 25601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 39650284 - 39650193
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttggcc-tttactttaggaatgagcgaaataatttaggtaaagagcataattcaag 203  Q
    ||||||||||||||||||||  |||| ||||||||||||| | ||||||||||||||||||||||  |||||||||| ||||| ||||||||    
T  39650284 aatacactagcgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattcaag 39650193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 20447255 - 20447188
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcag 86  Q
    |||||| ||| ||||||||||||| ||||||| |||||||| ||||||||||||| || |||||||||    
T  20447255 aaaaaaagtttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcag 20447188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 20533018 - 20532951
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcag 86  Q
    |||||| ||| ||||||||||||| ||||||| |||||||| ||||||||||||| || |||||||||    
T  20533018 aaaaaaagtttgttcttcagttctgaccaccgaccaactagcgtgagttaactcgcgcgaaggctcag 20532951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 41871823 - 41871767
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| ||||||||||||| |||||||||||||  | |||||||||||||    
T  41871823 ccaaaaaacgtttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcg 41871767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 39650455 - 39650396
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||||||||||   ||||||||||||||  |||||||||||    
T  39650455 cacagaccaaaaaacgtttgttcttcagttct--gcaccggccaactagcatgagttaactc 39650396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 1671324 - 1671408
Alignment:
Q  20 aaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtc 104  Q
    ||||||||| ||||||||||| | ||||||| |||||| | ||| ||||||||| ||  ||||||||||||  ||| ||||||||    
T  1671324 aaaaacgtttgttcttcagttttgaccaccgaccaacttgcgtgcgttaactcgcgcagaggctcagtggttcgtgacttaagtc 1671408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 46178731 - 46178675
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| ||||||||||||| |||||||| ||||  | |||||||||||||    
T  46178731 ccaaaaaacgtttgttcttcagttctgaccaccggtcaacatgcgtgagttaactcg 46178675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 48566848 - 48566792
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| ||||||||||||| |||||| ||||||  | |||||||||||||    
T  48566848 ccaaaaaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcg 48566792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 50065720 - 50065656
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgct 77  Q
    |||||||||||||||||| |||||||||||||   |||||||||||  | |||||||||||| ||||    
T  50065720 cacagaccaaaaaacgtttgttcttcagttct--gcaccggccaacctgcgtgagttaactcatgct 50065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 21482999 - 21482908
Alignment:
Q  14 agaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    |||| |||||| ||| ||||||||| ||| |||| ||||||||  | ||||||||||||||||  ||||| ||||||  ||| ||||||||||    
T  21482999 agactaaaaaaagtttgttcttcagctctgaccatcggccaacgtgcgtgagttaactcgtgcataggct-agtggtgcgtgacttaagtcac 21482908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 37891823 - 37891739
Alignment:
Q  50 ggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcacacttagaatacactagcgcatgttaagt 134  Q
    |||||||||| ||||||||||||| ||||||||||||||||  ||| |||||||||| || | |||||||||| |||||||||||    
T  37891823 ggccaactagcgtgagttaactcgcgctaaggctcagtggtgcgtgacttaagtcacgctcataatacactagtgcatgttaagt 37891739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 12967477 - 12967418
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||||| |||||  |||||||||||||| ||||||||||||    
T  12967477 cacagaccaaaaaacgtttgttcttcaattcta--caccggccaactagcgtgagttaactc 12967418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 29908593 - 29908537
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| |||||||||||||||||||||||||||  |  ||||||||||||    
T  29908593 ccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcatgagttaactcg 29908537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 29132628 - 29132687
Alignment:
Q  14 agaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||  | |||||||||||||    
T  29132628 agaccaaaaaacgtttgttcttcagctctgaccaccggccaacgtgcgtgagttaactcg 29132687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 22495894 - 22495953
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||| | | ||||||||||    
T  22495894 cacagaccaaaaaacgtttgttcttcagttcta--caccggccaactggcgcgagttaactc 22495953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 31133260 - 31133179
Alignment:
Q  120 tagcgcatgttaagttgcgcaggggcattt-tggcctttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    ||||||||||||| ||| | |||||||||| || | |||||||||  |||||||||||| |||| ||||||||||| |||||    
T  31133260 tagcgcatgttaacttgtgtaggggcatttatgacatttactttaaaaatgagcgaaatgatttgggtaaagagcagaattc 31133179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 6903714 - 6903767
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||| ||| ||||||||||||| |||||||||||| | |||||||||||||||    
T  6903714 aaaaaatgtttgttcttcagttctgaccaccggccaaat-gtgtgagttaactcg 6903767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 11713041 - 11712964
Alignment:
Q  118 actagcgcatgttaagttgcgcaggggcattttggccttt-actttaggaatgagcgaaataatttaggtaaagagca 194  Q
    |||||||||||||||  | || ||||||||||||| |||| ||||| |||||||||||||  || ||||||| |||||    
T  11713041 actagcgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcgaaaccatctaggtaatgagca 11712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 18394960 - 18395049
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattca 201  Q
    ||||||||||||||||||||  ||| ||| |||||||||| |  ||||||| ||||||||||| ||  ||| ||||| ||||| ||||||    
T  18394960 aatacactagcgcatgttaacatgcacagaggcattttggacaattactttgggaatgagcgatattgtttgggtaatgagcagaattca 18395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 37891710 - 37891673
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcatttt 150  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  37891710 aatacactagcacatgttaagttgtgcaggggcatttt 37891673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 2154350 - 2154262
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttg-gcctttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||||||||  ||||||||||||||| |||| |||||||  | |||||||| ||||||||||| ||  ||| ||||| ||||| |||||    
T  2154350 aatacactaatgcatgttaagttgcgtagggacattttgatcttttactttgggaatgagcgatattgtttgggtaatgagcagaattc 2154262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 8260969 - 8260882
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    |||||||||| |||| |||||||| |||||||||||||| | ||||||||||||| || |||||||||||||  ||| ||||||||||    
T  8260969 aaaaaacgtttgttcatcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctcagtggtgcgtgacttaagtcac 8260882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 30362750 - 30362838
Alignment:
Q  46 caccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcacacttagaatacactagcgcatgttaagt 134  Q
    ||||| |||||||| | ||||||||||| ||||||||||||||||  ||| |||||||||| || | ||||||||||||||| ||||||    
T  30362750 caccgaccaactagcgcgagttaactcgcgctaaggctcagtggtgcgtgacttaagtcacgctcataatacactagcgcatcttaagt 30362838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 30362867 - 30362956
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttg-gcctttactttaggaatgagcgaaataatttaggtaaagagcataattca 201  Q
    ||||||||||| |||||||||||||||| | ||||||||  | ||||||||| ||||||||||||  |||||  ||||||||| ||||||    
T  30362867 aatacactagcacatgttaagttgcgcatgagcattttgaacttttactttaagaatgagcgaaacgatttaaataaagagcagaattca 30362956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 2355558 - 2355485
Alignment:
Q  128 gttaagttgcgcaggggcattt-tggcctttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    ||||||||| |||| ||||||| || | ||||||||||||||||||||||  |||  |||||||||||||||||    
T  2355558 gttaagttgtgcagaggcatttgtgacatttactttaggaatgagcgaaacgattggggtaaagagcataattc 2355485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 20379669 - 20379746
Alignment:
Q  124 gcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||| |||||||||| ||||||||||||| | |||||||| |||||||||| ||  |||||| ||| |||||||||||    
T  20379669 gcatattaagttgcgtaggggcattttggacttttactttgggaatgagcggaaccatttagataatgagcataattc 20379746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 41219372 - 41219427
Alignment:
Q  18 caaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    ||||||||||| ||||||||||||| |||||| ||||||  | |||||||||||||    
T  41219372 caaaaaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcg 41219427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 1537236 - 1537274
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttg 151  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  1537236 aatacactagcgcatgttaacatgcgcaggggcattttg 1537274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 26502251 - 26502318
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaag 80  Q
    |||||||||||||||||| |||||||||||||   | |||||||| |||  |||||||||||| ||||||    
T  26502251 cacagaccaaaaaacgtttgttcttcagttct--gccccggccaagtagcatgagttaactcgcgctaag 26502318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 26590463 - 26590396
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaag 80  Q
    |||||||||||||||||| |||||||||||||   | |||||||| |||  |||||||||||| ||||||    
T  26590463 cacagaccaaaaaacgtttgttcttcagttct--gccccggccaagtagcatgagttaactcgcgctaag 26590396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 28138832 - 28138759
Alignment:
Q  128 gttaagttgcgcaggggcattttggcc-tttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||||||  |||||||| ||||||| | |||||||| ||||||||| |||| |||| ||||||||||| |||||    
T  28138832 gttaagtcacgcaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattc 28138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 4088 - 4001
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    |||||||||| ||||||||||||| |||||||| ||||| | ||||||||||||| |  |||||||||||||  ||| ||||||||||    
T  4088 aaaaaacgtttgttcttcagttctgaccaccggtcaacttgcgtgagttaactcgcggaaaggctcagtggtgcgtgacttaagtcac 4001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 195 - 262
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaag 80  Q
    ||||||| |||||||||| |||||||||||||   |||||||||||||||||||||||||||| ||||||    
T  195 cacagactaaaaaacgtttgttcttcagttctg--caccggccaactagtgtgagttaactcgcgctaag 262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 34471589 - 34471645
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| |||||||||||||||||||||||||||  | |||||||||||||    
T  34471589 ccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcgtgagttaactcg 34471645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 4640785 - 4640875
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcatttt-ggcctttactttaggaatgagcgaaataatttaggtaaagagcataattcaa 202  Q
    |||||||||||||||||||||||| | ||||||||||| | | |||||||| | ||||||||| | | ||| ||||| ||||| |||||||    
T  4640785 aatacactagcgcatgttaagttgtgtaggggcattttagtcttttactttggaaatgagcgatacagtttgggtaatgagcagaattcaa 4640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 2766858 - 2766931
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggt 90  Q
    |||||||||||| ||||||||||| | ||||| |||||||| | ||| ||||||||||||  ||| ||||||||    
T  2766858 ccaaaaaacgtttgttcttcagttttgaccactggccaacttgcgtgcgttaactcgtgcagaggttcagtggt 2766931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 37686704 - 37686624
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcatttt-ggcctttactttaggaatgagcgaaataatttaggtaaagag 192  Q
    |||||||||| ||||||||||||||||| || |||||| | | |||||||| ||||||| |||||  |||| |||||||||    
T  37686704 aatacactagtgcatgttaagttgcgcaaggccattttagacttttactttgggaatgaacgaaacgatttgggtaaagag 37686624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 3964099 - 3964043
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    ||||||||| |  |||||| || |||||||||||||||||| | |||||||||||||    
T  3964099 ccaaaaaacatgtgttcttgagctctaaccaccggccaacttgcgtgagttaactcg 3964043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 47068150 - 47068238
Alignment:
Q  46 caccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcacacttagaatacactagcgcatgttaagt 134  Q
    ||||||||||||||  |||||||||||| ||||  ||| ||||||  ||| |||||||||| || | ||||||||||||||||||||||    
T  47068150 caccggccaactagcatgagttaactcgcgctagtgctaagtggtgcgtgacttaagtcacgctcataatacactagcgcatgttaagt 47068238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 2325432 - 2325491
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||||||||||   |||||||||||||| ||||||||||||    
T  2325432 cacagaccaaaaaacgtttgttcttcagttct--gcaccggccaactagcgtgagttaactc 2325491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 25574917 - 25574827
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcacac 108  Q
    |||||||||||| ||||||||||||| ||||||| |||||  | ||||||||||||| ||  |||| |||||||  ||| ||||||||||||    
T  25574917 ccaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacac 25574827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 39415436 - 39415381
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||| |||||||||||||||||| ||||||||  | ||||||||||||    
T  39415436 ccaaaaaacgtttgttcttcagttctaaccatcggccaacgtgcgtgagttaactc 39415381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 42947622 - 42947563
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||| ||||||||||||| |||||||||||||   |||||||||||||| ||||||||||||    
T  42947622 cacataccaaaaaacgtttgttcttcagttct--gcaccggccaactagcgtgagttaactc 42947563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 44833682 - 44833623
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||| ||||||||||||| |||||||||||||   |||||||||||||| ||||||||||||    
T  44833682 cacataccaaaaaacgtttgttcttcagttct--gcaccggccaactagcgtgagttaactc 44833623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 6755711 - 6755767
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||  |||||| || |||||||||||||||||| | |||||||||||||    
T  6755711 ccaaaaaacgtgtgttcttgagctctaaccaccggccaacttgcgtgagttaactcg 6755767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 49303295 - 49303211
Alignment:
Q  22 aaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    ||||||| || |||||||| | |||||||||||||| | | ||||||||||| ||  ||||||||||||  ||| ||||||||||    
T  49303295 aaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcgcagaggctcagtggtgtgtgacttaagtcac 49303211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 42947458 - 42947375
Alignment:
Q  118 actagcgcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||||||||||||||  |||| ||| ||||||||| | ||||||||  ||||||| ||||| |||||||||| ||||| |||||    
T  42947458 actagcgcatgttaacatgcgtaggagcattttggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaattc 42947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 53827661 - 53827740
Alignment:
Q  123 cgcatgttaagttgcgcaggggcattttggcc-tttactttaggaatgagcgaaataatttaggtaaagagcataattca 201  Q
    ||||||||||  |||| ||||||||||||| | |||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  53827661 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcagaattca 53827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 54525847 - 54525800
Alignment:
Q  155 tttactttaggaatgagcgaaataatttaggtaaagagcataattcaa 202  Q
    |||||||| | ||||||||||  |||||||||||||||||||||||||    
T  54525847 tttactttggaaatgagcgaatcaatttaggtaaagagcataattcaa 54525800  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 48086933 - 48086877
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| |||  |||||||| |||||||||||||  | |||||||||||||    
T  48086933 ccaaaaaacgtttgttagtcagttctgaccaccggccaacgtgcgtgagttaactcg 48086877  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 10532886 - 10532827
Alignment:
Q  14 agaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||| | |||||||||||||    
T  10532886 agaccaaaaaacgtttgttcttcagctctgaccaccggccaacttgcgtgagttaactcg 10532827  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 1974244 - 1974154
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattcaa 202  Q
    ||||||||||||||||||||  |||||| | ||||||||| | |||||||| ||||||||||| |  || | ||||| |||||||||||||    
T  1974244 aatacactagcgcatgttaacatgcgcaagagcattttggacatttactttgggaatgagcgatactatctgggtaatgagcataattcaa 1974154  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 28784766 - 28784822
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| ||||||||||||| ||||||| |||||  | |||||||||||||    
T  28784766 ccaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcg 28784822  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 3461404 - 3461463
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||||| |||||| ||||||   |||||||||||| | ||||||||||||    
T  3461404 cacagaccaaaaaacgtttgttctttagttct--gcaccggccaactggcgtgagttaactc 3461463  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 6427376 - 6427318
Alignment:
Q  15 gaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||||| ||||||||| ||||| ||||||||||   | |||||||||||||    
T  6427376 gaccaaaaaacgtttgttcttcagctctaatcaccggccaaggtgcgtgagttaactcg 6427318  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 19401820 - 19401879
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    ||||||||||||||  || ||| |||||||||   |||||||||||||||||||||||||||    
T  19401820 cacagaccaaaaaatatttgtttttcagttctg--caccggccaactagtgtgagttaactc 19401879  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 7336117 - 7336162
Alignment:
Q  155 tttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||||||||| ||||||| |||  ||||||||||||||||||||||    
T  7336117 tttactttagaaatgagcaaaactatttaggtaaagagcataattc 7336162  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 11135825 - 11135741
Alignment:
Q  117 cactagcgcatgttaagttgcgcaggggcattttggcc-tttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||||||| | |||||  |||| ||||| ||||||| | |||| ||| | |||||||||||| |||| |||||||||||||||||    
T  11135825 cactagcgtaagttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataattc 11135741  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 41758708 - 41758764
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| ||||||||||||| |||||| ||||||  |  ||||||||||||    
T  41758708 ccaaaaaacgtttgttcttcagttctgaccaccagccaacgtgcatgagttaactcg 41758764  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 43147438 - 43147510
Alignment:
Q  34 ttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    ||||||| | |||||||||||||| | | |||||||||||||   ||||||||||||  ||| ||||||||||    
T  43147438 ttcagtttttaccaccggccaacttgcgcgagttaactcgtgtagaggctcagtggtgcgtgacttaagtcac 43147510  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 14153442 - 14153354
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    ||||||||||||||||||||  |||| ||||| ||||||| | |||||||| ||||||||| |||| |||| ||||| ||||| |||||    
T  14153442 aatacactagcgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 2419794 - 2419848
Alignment:
Q  19 aaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||| ||| ||||||||||||| |||||||||||||| | |||||||||||||    
T  2419794 aaaaaatgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcg 2419848  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 14153609 - 14153552
Alignment:
Q  13 cagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||||||||||| |||||||||||||   |||||||||||||| | ||||||||||    
T  14153609 cagaccaaaaaacgtttgttcttcagttct--gcaccggccaactagcgcgagttaactc 14153552  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 16444357 - 16444318
Alignment:
Q  113 aatacactagcgcatgttaagttgcgcaggggcattttgg 152  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  16444357 aatacactagcgcatgttaacatgcgcaggggcattttgg 16444318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 16444524 - 16444465
Alignment:
Q  11 cacagaccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactc 72  Q
    |||||||| ||||| ||| |||||||||||||   |||||||||||||| ||||||||||||    
T  16444524 cacagaccgaaaaatgtttgttcttcagttctg--caccggccaactagcgtgagttaactc 16444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 13312677 - 13312589
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcgtgctaaggctcagtggtaggtgccttaagtcac 106  Q
    |||||||| ||| ||||||||||||| |||| ||||||||    ||||||||||||||||  |||| |||||||  ||| ||||||||||    
T  13312677 ccaaaaaatgtttgttcttcagttctgaccatcggccaacgtacgtgagttaactcgtgcccaggc-cagtggttcgtgacttaagtcac 13312589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 319315 - 319259
Alignment:
Q  17 ccaaaaaacgttcgttcttcagttctaaccaccggccaactagtgtgagttaactcg 73  Q
    |||||||||||| ||||||||||||| ||||||  |||||  | |||||||||||||    
T  319315 ccaaaaaacgtttgttcttcagttctgaccaccacccaacgtgcgtgagttaactcg 319259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 35060895 - 35060975
Alignment:
Q  123 cgcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattcaa 202  Q
    ||||||||||  |||| ||||||||||||| | |||||||| | |||||||| ||| |||| ||||| ||||| |||||||    
T  35060895 cgcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattcaa 35060975  T

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Target: scaffold1763 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 397 - 442
Alignment:
Q  155 tttactttaggaatgagcgaaataatttaggtaaagagcataattc 200  Q
    |||||||| |||||||||||||  |||| |||||||||||||||||    
T  397 tttactttgggaatgagcgaaaccatttgggtaaagagcataattc 442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 1553 - 1473
Alignment:
Q  123 cgcatgttaagttgcgcaggggcattttgg-cctttactttaggaatgagcgaaataatttaggtaaagagcataattcaa 202  Q
    ||||||||||  |||||||||||||||||| | |||||||||  |||||||| ||  |||| ||||| ||||| |||||||    
T  1553 cgcatgttaacatgcgcaggggcattttggacttttactttaaaaatgagcggaaccatttgggtaatgagcagaattcaa 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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