View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21108_high_9 (Length: 239)
Name: NF21108_high_9
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21108_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9360616 - 9360421
Alignment:
| Q |
1 |
tcacaaaaagaaactcaa-tgttacattacataaactccttcnnnnnnnntattacaaatgaattaaatttaaatcttgaaaacacaatttaaatctagc |
99 |
Q |
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| T |
9360616 |
tcacaaaaggaaactcaaatgttacattacataaactccttcaaaaaca-tattacaaatgaattaaatttaaatcttgaaaacacaatttaaatgtaac |
9360518 |
T |
|
| Q |
100 |
atcaagatgtccnnnnnnnnnnnnn------tgattatcaaattttcttttatcattaggaaaggaactcggcatcaatggtttacaacattgtcgt |
190 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |
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| T |
9360517 |
atcaatatgtccaaaaaaaaattaaaaaaaatgattatcaaattttcttttatcattaggaaacgaactcggcatcaatggtttataacactgtcgt |
9360421 |
T |
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