View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21108_low_5 (Length: 337)
Name: NF21108_low_5
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21108_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 1407283 - 1407585
Alignment:
| Q |
17 |
tggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactccttt |
116 |
Q |
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| T |
1407283 |
tggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagattagaaaatacatgtagtaaatgttgaattttttctctgtccaactccttt |
1407382 |
T |
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| Q |
117 |
ttgttttcttcagcgagcaacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaaga |
216 |
Q |
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| T |
1407383 |
ttgttttcttcagcgagcaacgagtctaacatatcgttgttggcgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaaga |
1407482 |
T |
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| Q |
217 |
taccaaacaactttcctacataaaacacataggtccttttgatgccttgtggatcaatcaacctcaacaatggnnnnnnntcagccatgtttggagatcc |
316 |
Q |
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| T |
1407483 |
taccaaacaactttcctacataaaacacataggtccttttgatgccttgtggatcaatcaacctcaacaatggaaaaaaatcagccatgtttggagatcc |
1407582 |
T |
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| Q |
317 |
aac |
319 |
Q |
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||| |
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| T |
1407583 |
aac |
1407585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 35 - 319
Target Start/End: Complemental strand, 1364121 - 1363839
Alignment:
| Q |
35 |
atcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc |
134 |
Q |
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| T |
1364121 |
atcaaacatcataattgtaaatagtaaga--ttagaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc |
1364024 |
T |
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| Q |
135 |
aacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttccta |
234 |
Q |
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| T |
1364023 |
aaggagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaagataccaaacaactttccta |
1363924 |
T |
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| Q |
235 |
cataaaacacataggtccttttgatgccttgtggatcaatcaacctcaacaatggnnnnnnntcagccatgtttggagatccaac |
319 |
Q |
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| T |
1363923 |
cataaaacacataggtccttttgatgccttgtggatcaatcaacctcaacaatggaaaaaaatcagccatgtttggagatccaac |
1363839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 289
Target Start/End: Complemental strand, 1369656 - 1369417
Alignment:
| Q |
56 |
tagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcag------cgagcaacgagtctaacata |
149 |
Q |
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||||||| |||| ||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||||| ||||||| ||||||| ||| |
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| T |
1369656 |
tagtaagggattagaaaatacatgtaataaatgttcaattttttctctatccaactcctttctgttttcttcaggaatgtcgagcaaggagtctagcatg |
1369557 |
T |
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| Q |
150 |
tcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttcctacataaaacacatagg |
249 |
Q |
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| T |
1369556 |
tcgttgttggtgaaaaaaccatcctcttctcgcaacttcaacctttggtcgattatgttgtcgaagacattgaacaactttccaatataaaacatatagg |
1369457 |
T |
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| Q |
250 |
tccttttgatgccttgtggatcaatcaacctcaacaatgg |
289 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||| |
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| T |
1369456 |
tctttttgatgccttgtggatcaatcaacctcaataatgg |
1369417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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