View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21108_low_7 (Length: 305)

Name: NF21108_low_7
Description: NF21108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21108_low_7
NF21108_low_7
[»] chr5 (1 HSPs)
chr5 (95-267)||(2638252-2638427)
[»] chr7 (2 HSPs)
chr7 (52-96)||(39182790-39182834)
chr7 (52-97)||(6944180-6944225)
[»] chr4 (1 HSPs)
chr4 (52-97)||(18302865-18302910)
[»] chr3 (1 HSPs)
chr3 (52-97)||(13235031-13235076)
[»] chr8 (1 HSPs)
chr8 (52-97)||(42913466-42913511)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 95 - 267
Target Start/End: Complemental strand, 2638427 - 2638252
Alignment:
Q  95 attacttttaattgatgcttctttttctttttatat--gcattctaaacttaggttactatgcatttttt-agttataccattcaattcaaagaatgaat 191  Q
    ||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||     
T  2638427 attacttttaattgatgcttctttttctttttatatatgccctctaaacttaggttactatgtttttttttagttataccattcaattcaaagaatgaac 2638328  T
Q  192 gtggacttaatttggctagttcgtccattgttttggttaatttgaatctctttgttcatcgatttgtcctttgctt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2638327 gtggacttaatttggctagttcgtccattgttttggttaatttgaatctctttgttcatcgatctgtcctttgctt 2638252  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 39182834 - 39182790
Alignment:
Q  52 caaggatcctctcattcattatgttagatatcaaggaaaatgcat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39182834 caaggatcctctcattcattatgttagatatcaaggaaaatgcat 39182790  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 6944225 - 6944180
Alignment:
Q  52 caaggatcctctcattcattatgttagatatcaaggaaaatgcatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  6944225 caaggatcctctcattcattatgttagatatcaaggaaaatacatt 6944180  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 18302865 - 18302910
Alignment:
Q  52 caaggatcctctcattcattatgttagatatcaaggaaaatgcatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  18302865 caaggatcctctcattcattatgttagatatcaaggaaaatacatt 18302910  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 13235031 - 13235076
Alignment:
Q  52 caaggatcctctcattcattatgttagatatcaaggaaaatgcatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  13235031 caaggatcctctcattcattatgttagatatcaaggaaaatacatt 13235076  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 42913466 - 42913511
Alignment:
Q  52 caaggatcctctcattcattatgttagatatcaaggaaaatgcatt 97  Q
    |||||||||||||||||||||||| | || ||||||||||||||||    
T  42913466 caaggatcctctcattcattatgtgaaatgtcaaggaaaatgcatt 42913511  T

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