View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21109_high_5 (Length: 307)
Name: NF21109_high_5
Description: NF21109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21109_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 861622 - 861902
Alignment:
| Q |
9 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
108 |
Q |
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| T |
861622 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
861721 |
T |
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| Q |
109 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
861722 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
861821 |
T |
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| Q |
209 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
289 |
Q |
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| T |
861822 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
861902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 1222899 - 1223179
Alignment:
| Q |
9 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1222899 |
agacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagataccaagggcaacacccat |
1222998 |
T |
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| Q |
109 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
208 |
Q |
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| T |
1222999 |
agcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaataataagcagccaa |
1223098 |
T |
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| Q |
209 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
289 |
Q |
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| T |
1223099 |
gagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
1223179 |
T |
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