View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21109_low_1 (Length: 397)
Name: NF21109_low_1
Description: NF21109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21109_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 39776568 - 39776199
Alignment:
| Q |
13 |
agcaaaggaaattattaacaagaaaacaatggaaggaaattgtgctagactgaaatgcagtaataatagacatacagattcatccaaattcctaaaaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39776568 |
agcaaaggaaattattaacaagaaaacaatggaaggaaattgtgctagactgaaatgcagtaataatagacatacagattcatccaaattcctaaaaatg |
39776469 |
T |
|
| Q |
113 |
tggaaactgccaacaaagaaaatggtttatggacccaaaataattaaagctaaagcttttatcattcaataacaagtcagtccaaatttttagttagaat |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39776468 |
tggaacctgccaacaaagaaaatggtttatggacccaaaataattaaagctaaagcttttatcattcaataacaagtcagtccaaatttttagttagaat |
39776369 |
T |
|
| Q |
213 |
tatttaaataaatgagtcagattcaattcatctaattttttcacaagtcaaactcaagaattggtccggcttaactcgttttaaccaataatatcaatga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39776368 |
tatttaaataaatgagtcagattcaattcatctaattttttcacaagtcaaactcaagaattggtccggcttaactcgtttgaaccaataatatcaatga |
39776269 |
T |
|
| Q |
313 |
tcaagtcatccannnnnnncccaagttaaactcaaactttaagtatttgtctcgactcctatgatgcatt |
382 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39776268 |
tcaagtcatccatttttttcccaagttaaactcaaactttaagtatttgtctcgactcctatgatgcatt |
39776199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University