View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_high_4 (Length: 353)
Name: NF2110_high_4
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 67 - 338
Target Start/End: Original strand, 13215535 - 13215807
Alignment:
| Q |
67 |
aaaacaaatgggctcttgattaattttactctattttatgatttcattgctaaaatgtcccacaaataagggtttccttgatatgaaannnnnnnnnnnn |
166 |
Q |
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| T |
13215535 |
aaaacaaatgggctcttgattaattttactctattttatgatttcattgctaaaatgtcccacaaataagg-tttccttgatatgaaagtttttttaaaa |
13215633 |
T |
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| Q |
167 |
nnttgtattgatga--ccggcaatttttagtaaaatatgannnnnnnnnnnctacagtaaatagacttgaatcatttaagcaaggactctagttcaaact |
264 |
Q |
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| T |
13215634 |
aattgtattgatgaacccggcgatttttagtaaaatatgatttttttttttctacagtaaatagacttgaatcatttaagcaaggactctagttcaaact |
13215733 |
T |
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| Q |
265 |
ttgagtt-tcctacgataactctactaaatatggttaatcaaatattttcaatggagataagtgatgaaaaaact |
338 |
Q |
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| T |
13215734 |
ttgagttatcgtagga-aactctactaaatatggttaatcaaatattttcaatggagataagtgatgaaaaaact |
13215807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 13215475 - 13215505
Alignment:
| Q |
13 |
aatattcaaataataaaagtgattaaaaata |
43 |
Q |
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| T |
13215475 |
aatattcaaataataaaagtgattaaaaata |
13215505 |
T |
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