View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2110_high_5 (Length: 338)

Name: NF2110_high_5
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2110_high_5
NF2110_high_5
[»] chr8 (4 HSPs)
chr8 (249-313)||(16037945-16038009)
chr8 (17-78)||(21488589-21488650)
chr8 (253-301)||(37512867-37512915)
chr8 (140-177)||(21488649-21488686)
[»] chr2 (1 HSPs)
chr2 (249-330)||(6364235-6364318)
[»] chr5 (2 HSPs)
chr5 (250-313)||(7440193-7440256)
chr5 (249-330)||(41393416-41393496)
[»] chr3 (2 HSPs)
chr3 (21-174)||(8374876-8375030)
chr3 (253-295)||(39692157-39692199)
[»] chr4 (2 HSPs)
chr4 (257-330)||(55591033-55591107)
chr4 (17-173)||(17859981-17860138)


Alignment Details
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 16037945 - 16038009
Alignment:
Q  249 ctagcattttctcttgtttggcacacacatgaaagagataagagagacaaatctgtggtggggcc 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  16037945 ctagcattttctcttgtttggcacacacatgaaagagagaagagagacaaatctgagatggggcc 16038009  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 21488589 - 21488650
Alignment:
Q  17 tgttgttctctcaaatccatttaagcatctaatattgtgttatagcttcggaagttggtatt 78  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| || ||| ||||||||    
T  21488589 tgttgttctctcaaatccatttgagcgtctaatattgtgttatagcatccgaaattggtatt 21488650  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 37512867 - 37512915
Alignment:
Q  253 cattttctcttgtttggcacacacatgaaagagataagagagacaaatc 301  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  37512867 cattttctcttgtttggtacacacatgaaagagagaagagagacaaatc 37512915  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 21488649 - 21488686
Alignment:
Q  140 tttaccatccatgaagtgatggatatgaaaaatatgat 177  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21488649 tttaccatccatgaagtgatggatatgaaaaatatgat 21488686  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 6364235 - 6364318
Alignment:
Q  249 ctagcattttctcttgtttggcacacacatgaaagagataagagagacaaatctgtggtgggg--ccatatgttttttcttctc 330  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||  |||  ||||||||||||||    
T  6364235 ctagcattttctcttgtttggcacacacatgaaagaaagaagagagacaaatttgtggtgggggcccacgtgttttttcttctc 6364318  T

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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 7440193 - 7440256
Alignment:
Q  250 tagcattttctcttgtttggcacacacatgaaagagataagagagacaaatctgtggtggggcc 313  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  7440193 tagcattttctcttgtttggcacacacatgaaagagagaagagagacaaatctgagatggggcc 7440256  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 41393496 - 41393416
Alignment:
Q  249 ctagcattttctcttgtttggcacacacatgaaagagataagagagacaaatctgtggtgggg-ccatatgttttttcttctc 330  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||||| | ||||| ||| |||||||||||||||    
T  41393496 ctagcattttctcttgtttggcacacacatgaaagag--aggagagacaaatctgcgatggggcccacatgttttttcttctc 41393416  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 8374876 - 8375030
Alignment:
Q  21 gttctctcaaatccatttaagcatctaatattgtgttatagcttcggaagttggtattagagataattatgaatcagagagttctaagtgtgag-aaatt 119  Q
    ||||||||||||| || ||||||| | |||| |||||||||  || |||||||||||||||||||| | |||| || |||| ||  ||| |||| |||||    
T  8374876 gttctctcaaatctatgtaagcatatgatatcgtgttatagtatccgaagttggtattagagataactttgaagcaaagagctcggagtctgagaaaatt 8374975  T
Q  120 agtatttgttggaagggctctttaccatccatgaagtgatggatatgaaaaatat 174  Q
     |||||||||| |||   || ||| ||| ||| ||||||||||| ||||||||||    
T  8374976 ggtatttgttgtaagttttcattatcattcataaagtgatggatgtgaaaaatat 8375030  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 39692157 - 39692199
Alignment:
Q  253 cattttctcttgtttggcacacacatgaaagagataagagaga 295  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  39692157 cattttctcttgtttggcacacacatgaaagagagaagagaga 39692199  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 55591107 - 55591033
Alignment:
Q  257 ttctcttgtttggcacacacatgaaagagataagagagacaaatctgtggt-ggggccatatgttttttcttctc 330  Q
    |||||||||||||||||  || |||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||    
T  55591107 ttctcttgtttggcacatgcaagaaagagagaagagagacaaatgtgtggtagggcccacatgttttttcttctc 55591033  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 17859981 - 17860138
Alignment:
Q  17 tgttgttctctcaaatccatttaagcatctaatattgtgttatagcttcggaagttggtattagagataattatgaatcagagagttctaagtgtgagaa 116  Q
    ||||||||||||||||     ||||||||||||| | |||||||   || ||||||| |||||||||| |||||| |    |||| | | ||| ||||||    
T  17859981 tgttgttctctcaaatatgcgtaagcatctaataatttgttataagatccgaagttgatattagagattattatggacggaagagctttgagtttgagaa 17860080  T
Q  117 a-ttagtatttgttggaagggctctttaccatccatgaagtgatggatatgaaaaata 173  Q
    | || ||||||||||  || | ||||||||||| | ||||||||||||||||||||||    
T  17860081 agttggtatttgttgcgagtgttctttaccatctaagaagtgatggatatgaaaaata 17860138  T

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