View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2110_high_7 (Length: 283)
Name: NF2110_high_7
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_high_7 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0140 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 33579 - 33841
Alignment:
| Q |
6 |
gacatcatcaaatgacatcacgggccctttctatccaaaaaagacatcacgggcccttgtcaaattagaaataaataaatcaaattacagacttacagca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33579 |
gacatcatcaaatgacatcacgggccctttctatccaaaaa-gacatcacgggcccttgtcaaattagaaataaataaatcaaattacagacttacagca |
33677 |
T |
|
| Q |
106 |
gcatgtgnnnnnnnctaaccaaaagttataacatgtgttaaacattaacacttgtcttcaaatggagaaaggaagttatatgggtggtatttcctaagag |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33678 |
gcatgtgtttttttctaaccaaaagttataacatgtgttaaacattaacacttgtcttcaaatggagaaaggaagttagatgggtggtatttcctaagag |
33777 |
T |
|
| Q |
206 |
aatagagatttgagtaatgatagtatttgtttaatgttttgtgataactttttgggcaaccttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
33778 |
aatagagatttgagtaatgatagtatttgttgaatgttttgtgataactttttacgcaaccttc |
33841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University