View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_high_8 (Length: 273)
Name: NF2110_high_8
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11108740 - 11108483
Alignment:
| Q |
1 |
aggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaaagctccaccta |
100 |
Q |
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| T |
11108740 |
aggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaaagttccaccta |
11108641 |
T |
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| Q |
101 |
aggctaagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtccgtcgtcttgtgt-ttttg |
199 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
11108640 |
aggctaagaatatggtatggtgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtctgtcgtcttgtgttttttg |
11108541 |
T |
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| Q |
200 |
tcacgaccctcacgaggactgttatcatctgtttttccactgctgtacagcagttggt |
257 |
Q |
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| T |
11108540 |
tcacgaccctcacgcggactgttatcatctgtttttccgctgctgtacagcagttggt |
11108483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11594899 - 11594637
Alignment:
| Q |
1 |
aggagtacttaccggatttttgtggaagagattgtgg-------atgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaaagct |
93 |
Q |
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| T |
11594899 |
aggagtgcttaccgggtttgtgtggaagagattgtggtctgtggatgtttctcatttgcacagaaatggtttttggggtggaatttggaatttaaaagtt |
11594800 |
T |
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| Q |
94 |
ccacctaaggctaagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtccgtcgtcttgtg |
193 |
Q |
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| T |
11594799 |
ccacctaaggttaaaaatat-gcatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggag-aaactgtctgttgtcttgtg |
11594702 |
T |
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| Q |
194 |
-tttttgtcacgaccctcacgaggactgttatcatctgtttttccactgctgtacagcagttggt |
257 |
Q |
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||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
11594701 |
ttttttgtaatgaccctcacgaggactgttatcatatgtttttccactgttgtacagcagttggt |
11594637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41469620 - 41469882
Alignment:
| Q |
1 |
aggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaaagctccaccta |
100 |
Q |
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|||||| ||||||| ||| |||||||||||| | ||| | || |||||||||| || ||||||| ||||||||||||||| ||||||| |||||||| |
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| T |
41469620 |
aggagtgcttaccgagtttgtgtggaagagatcgcagatatgtcgcatttgcacacaaacggtttttggggtggaatttggaaattaaaagttccaccta |
41469719 |
T |
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| Q |
101 |
aggctaagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttga------agtccagaggagtaaactgtccgtcgtcttgtgt |
194 |
Q |
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||| |||||||||| | |||||||| |||||||| |||||||||||| | |||||||||| |||| |||||||| || ||||| ||||| ||||| |
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| T |
41469720 |
aggttaagaatatgttgtggcgagtgtgtagagaatgtttacctactcgcgtgcgtttgaacttgtagtctagaggagttaaatgtccatcgtcgtgtgt |
41469819 |
T |
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| Q |
195 |
-ttttgtcacgaccctcacgaggactgttatcatctgtttttccactgctgtacagcagttgg |
256 |
Q |
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|||||| || ||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
41469820 |
attttgtaacaaccctcatgaggactgttatcatatgtttttccactgttgtacagcagttgg |
41469882 |
T |
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