View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_low_1 (Length: 700)
Name: NF2110_low_1
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 15 - 685
Target Start/End: Complemental strand, 2521748 - 2521079
Alignment:
| Q |
15 |
atatagtgacatgaaaacctaaagttataccatatcgcagcaatggatagtgcttctgattgaccttgagatccatgtgaaacatccattccaataacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521748 |
atatagtgacatgaaaacctaaagttataccataccgcagcaatggatagtgcttctgattgaccttgagatccatgtgaaacatccattccaataacca |
2521649 |
T |
|
| Q |
115 |
atgtaggtatttttgaaaacagtggtatcgaatgctcaaattcagttaacaaaaaggaattcatcccaccaagctgcatgaaataagttaagcgaaagta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521648 |
atgtaggtatttttgaaaacagtggtatcgaatgcttaaattcagttaacaaaaaggaattcatcccaccaagctgcatgaaataagttaagcgaaagta |
2521549 |
T |
|
| Q |
215 |
aaatgtgagtagtttccaaaataatggaatcataggagacatattatatgactcgagatgagtatacgctgcagaaaaacaagaaaaaattactatgtag |
314 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521548 |
aaatgtgagtagtttccagaataatggaatcataggagacatattatatgactcgagatgagtatacgctgcagaaaaacaagaaaaaattactatgtag |
2521449 |
T |
|
| Q |
315 |
ggcgttgggtgctcgcacaaggctctaggcgctgacattatgtatgccaaaatcctgaaaggtattcgccaatatacccttttgcatccaatatacatag |
414 |
Q |
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| T |
2521448 |
ggcgttgggtgctcgcacaaggctctaggcgctgacattatgtatgccaaaatcctgaagggtattcgccaatatacccttttgcatccaatatacatag |
2521349 |
T |
|
| Q |
415 |
attggcaggggcgaaccaaacttaaaggttagtgtggataaacacactttggagttatctaagtgtaatcttcatgaacatcctttttgttcaagttttt |
514 |
Q |
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| T |
2521348 |
attggca-gggcgaaccaaacttaaaggttagtgtggataaacacactttggagttatctaagtgtaatcttcatgaacatcctttttattcaagttttt |
2521250 |
T |
|
| Q |
515 |
attgaagcaacctcacaaaacaagattaaacataaaacatatgcattacctttgcattaattttcaatagaacattaataatgtaatgatcattaatttt |
614 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521249 |
attgaagcaaccccacaaaacaagattaaacataaaacatatgcattacctttgcattaattttcaatagaacattaataatgtaatgatcattaatttt |
2521150 |
T |
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| Q |
615 |
tgttggagcaatgcattgtgtcgcaatcccttcatcaacaagacatcttcttttccaaggacctatatatt |
685 |
Q |
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| T |
2521149 |
tgttggagcaatgcattgtgttgcaatcccttcatcaacaagacatcttcttttccaaggacctatatatt |
2521079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 30283731 - 30283786
Alignment:
| Q |
396 |
ttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtgg |
451 |
Q |
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|
| T |
30283731 |
ttgcatccaatatacatttattggtgggggcgaatcgaacttaaaggttagtgtgg |
30283786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 452
Target Start/End: Complemental strand, 14615344 - 14615288
Alignment:
| Q |
396 |
ttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtgga |
452 |
Q |
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||||||||||||||||| ||||| |||||||| | ||| |||||||||||||||| |
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| T |
14615344 |
ttgcatccaatatacatttattggtgggggcgaatcgaacctaaaggttagtgtgga |
14615288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 443 - 510
Target Start/End: Original strand, 26842155 - 26842220
Alignment:
| Q |
443 |
ttagtgtggataaacacactttggagttatctaagtgtaatcttcatgaacatcctttttgttcaagt |
510 |
Q |
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| T |
26842155 |
ttagtttggatacacatactttagagtt--ctaagtgtaatcttcatcaacaacctctttgttcaagt |
26842220 |
T |
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