View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_low_15 (Length: 235)
Name: NF2110_low_15
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 21011162 - 21011367
Alignment:
| Q |
4 |
gagaaagagagagttaggagtgttatgagggatggttgaatggaaggtgtcttataaaaagtagtccaagttactgtataaggaaggttgccttataaac |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21011162 |
gagagagagagagttaggagtgttatgagggatggttgaatggaaggtgtcttataagaagtagtccaagttactgtataaggaaggttgccttataaac |
21011261 |
T |
|
| Q |
104 |
cgggggttggagnnnnnnncagacaataggaaatatgtggccaaatcctaactccctaccctatgctctacaaaa-cctattgaataatacatacaaatt |
202 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
21011262 |
cgggggttggagaaaaaaacagacaataggaaatctgtggccaaatcctaactccctaccctatgctctacaaaatcctatttaataatacatacaaatt |
21011361 |
T |
|
| Q |
203 |
ctattt |
208 |
Q |
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|||||| |
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| T |
21011362 |
ctattt |
21011367 |
T |
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