View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_low_16 (Length: 230)
Name: NF2110_low_16
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_low_16 |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 7503349 - 7503544
Alignment:
| Q |
20 |
atggggcaacaatgaagagtttagtttatgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtagccatctctccataaaatgatatcaa |
119 |
Q |
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| T |
7503349 |
atgggacaacaatgaagagtttagtttatgattccttcgaaccaatttcatctaaaattgacatgtgaaaagtagtcatctttccataaaataatatcaa |
7503448 |
T |
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| Q |
120 |
agcaatagattcgttaattaacatcaccaagtgtctctaaacccatttatgatcttaaacttcatcaatgactatgatatgggtgttgtaataaat |
215 |
Q |
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| T |
7503449 |
agcaatagattcgataattaacatcaccaagtgtctctaaacccatttatgatcttaaacttcatcactgactatgatatgggtgttgtaataaat |
7503544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 7488776 - 7488915
Alignment:
| Q |
47 |
atgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtagccatctctccataaaatgatatcaaagcaatagattcgttaattaacatcac |
146 |
Q |
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| T |
7488776 |
atgattctttcacaccaatttcacccaaaattgatatgtgaaaagtagttatttctccacaatatgatattaaagcaatagattcattaattaacgtcac |
7488875 |
T |
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| Q |
147 |
caagtgtctctaaacccatttatgatcttaaacttcatca |
186 |
Q |
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| T |
7488876 |
caagtgtctctgaacccaattaagatctaaaacatcatca |
7488915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 7498895 - 7499043
Alignment:
| Q |
26 |
caacaatgaagagtttagtttatgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtagccatctctccataaaatgatatcaaagcaat |
125 |
Q |
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| T |
7498895 |
caacattgaagagtttagtccatgattctttcacgtcaatttcatccaaaattgatatgtgaaaagtagtcatttctccacaatatgatattaaagcaat |
7498994 |
T |
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| Q |
126 |
agattcgttaattaacatcaccaagtgtctctaaacccatttatgatct |
174 |
Q |
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| T |
7498995 |
agattcattaattaacgtcaccaagtgtctcttaacccaattaagatct |
7499043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 368870 - 368802
Alignment:
| Q |
26 |
caacaatgaagagtttagtttatgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtag |
94 |
Q |
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| T |
368870 |
caacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtag |
368802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 51870073 - 51870005
Alignment:
| Q |
26 |
caacaatgaagagtttagtttatgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtag |
94 |
Q |
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| T |
51870073 |
caacaataaagagtttagtctataattccttcacgccgagttcacctaaaattgatatgtgataagtag |
51870005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 16249 - 16296
Alignment:
| Q |
47 |
atgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtag |
94 |
Q |
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| T |
16249 |
atgattccttcttaccaatttcacccaaaattgatatgtgaaaagtag |
16296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 10546 - 10480
Alignment:
| Q |
30 |
aatgaagagtttagtttatgattccttcgaaccaatttcacctaaaattgacatgtgaaaagtagcc |
96 |
Q |
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| T |
10546 |
aatgaagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaagtagcc |
10480 |
T |
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