View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_low_17 (Length: 221)
Name: NF2110_low_17
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_low_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 11108755 - 11108543
Alignment:
| Q |
9 |
gaacaatattcggttaggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatt |
108 |
Q |
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| T |
11108755 |
gaacaatattcggttaggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatt |
11108656 |
T |
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| Q |
109 |
taaaagctccacctaaggctaagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtccgtc |
208 |
Q |
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| T |
11108655 |
taaaagttccacctaaggctaagaatatggtatggtgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtctgtc |
11108556 |
T |
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| Q |
209 |
gtcttgtgttttt |
221 |
Q |
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| T |
11108555 |
gtcttgtgttttt |
11108543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 11594912 - 11594697
Alignment:
| Q |
11 |
acaatattcggttaggagtacttaccggatttttgtggaagagattgtgg-------atgtttctcatttgcacaggaatggtttttcgggtggaatttg |
103 |
Q |
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| T |
11594912 |
acaatattcggttaggagtgcttaccgggtttgtgtggaagagattgtggtctgtggatgtttctcatttgcacagaaatggtttttggggtggaatttg |
11594813 |
T |
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| Q |
104 |
gaatttaaaagctccacctaaggctaagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgt |
203 |
Q |
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| T |
11594812 |
gaatttaaaagttccacctaaggttaaaaatat-gcatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggag-aaactgt |
11594715 |
T |
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| Q |
204 |
ccgtcgtcttgtgttttt |
221 |
Q |
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| T |
11594714 |
ctgttgtcttgtgttttt |
11594697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 41469607 - 41469780
Alignment:
| Q |
11 |
acaatattcggttaggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaattta |
110 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||| | ||| | || |||||||||| || ||||||| ||||||||||||||| ||| |
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| T |
41469607 |
acaatattcggttaggagtgcttaccgagtttgtgtggaagagatcgcagatatgtcgcatttgcacacaaacggtttttggggtggaatttggaaatta |
41469706 |
T |
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| Q |
111 |
aaagctccacctaaggctaagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaa |
184 |
Q |
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| T |
41469707 |
aaagttccacctaaggttaagaatatgttgtggcgagtgtgtagagaatgtttacctactcgcgtgcgtttgaa |
41469780 |
T |
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