View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_low_18 (Length: 213)
Name: NF2110_low_18
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 6143270 - 6143451
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcct |
117 |
Q |
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| T |
6143270 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatctgttgaagttaacttctcacaaatcaattgaatgacaggggaaagaaatgccc |
6143369 |
T |
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| Q |
118 |
gaccaacatcaacctctgccatgatatcaattaattgaacaaaaccaaaatgatctgtgctagcgtggttcgcaactctgtg |
199 |
Q |
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| T |
6143370 |
taccaacatcaacctctgccatgatatcaattaattgaacaaaaccaaaatgatctgtgctagcgtggttcgcaactctgtg |
6143451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 13269670 - 13269490
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |
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| T |
13269670 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaatttctcacaaatcaattgaatgataggggaaagaaatgcct |
13269571 |
T |
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| Q |
118 |
gaccaacatcaacctctgccatgatatca-attaattgaacaaaaccaaaatgatctgtgctagcgtggttcgcaactctg |
197 |
Q |
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| T |
13269570 |
gaccaacatcaacctctgccatgatataatagatattgaacaaaaacaaaatgatctgagcaagcgtgtttcacaactctg |
13269490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 6238618 - 6238797
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcct |
117 |
Q |
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||||||||||||||||| ||||| |||| || ||||||||||||| |||||||| |||| ||||| ||||||||||||||| | ||||||||||||||| |
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| T |
6238618 |
atttcaagttttttcactagcccatcattcaagtagtctctgaaatctgttgaagctaacctctcataaatcaattgaatgataggggaaagaaatgcct |
6238717 |
T |
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| Q |
118 |
gaccaacatcaacctctgccatgatatcaattaattgaacaaaaccaaaatgatctgtgctagcgtggttcgcaactctg |
197 |
Q |
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| T |
6238718 |
gaccaacaacaacctctgccatgatatcaattaattgaacaaaaacaaaatgatctgagcaagcgtgtttcacaactctg |
6238797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 6246259 - 6246413
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcct |
117 |
Q |
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| T |
6246259 |
atttcaagttttttcacaagcttttcatggaggtagtcactgaaatctgttgaagctaatctctcacaaatcaattgaatgacgggggaaagaaatgccc |
6246358 |
T |
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| Q |
118 |
gaccaacatcaacctctgccatgatatcaattaattgaacaaaaccaaaatgatc |
172 |
Q |
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| T |
6246359 |
gacgaacaacaacctctgccatgatatcaattaattcaacaaaaccaaaatgatc |
6246413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 6169860 - 6170014
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcct |
117 |
Q |
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||||||||||||||||| || ||||||||| ||||| || |||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |
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| T |
6169860 |
atttcaagttttttcacatgcttttcatggaagtagtcactcaaatctgttgaagctaatctctcacaaatcaattgaatgacgggggaaagaaatgccc |
6169959 |
T |
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| Q |
118 |
gaccaacatcaacctctgccatgatatcaattaattgaacaaaaccaaaatgatc |
172 |
Q |
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| T |
6169960 |
gacgaacaacaacctctgccatgatatcaattaattcaacaaaaccaaaatgatc |
6170014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 6260124 - 6260221
Alignment:
| Q |
19 |
tttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcc |
116 |
Q |
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|||||||||| ||||| ||||||| | ||| ||||||||||||| |||||||| ||| ||| |||||||||| |||| ||| |||||||||||||| |
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| T |
6260124 |
tttcaagtttattcacaagccctttgtcgaagtagtctctgaaatctgttgaagctaaactcttacaaatcaatcgaatcacaggggaaagaaatgcc |
6260221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 6266642 - 6266740
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaatatgttgaagttaacttctcacaaatcaattgaatgacaagggaaagaaatgcc |
116 |
Q |
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||||||||||||||| ||||| ||||| ||| ||| ||| ||||| |||||||| |||| ||||||||||| ||| |||| | |||||||||||||| |
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| T |
6266642 |
atttcaagttttttccccagctcttcacggacgtagcctccgaaatctgttgaagataacctctcacaaatctcttggatgataggggaaagaaatgcc |
6266740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 7751052 - 7751097
Alignment:
| Q |
18 |
atttcaagttttttcaccagcccttcatggaaatagtctctgaaat |
63 |
Q |
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||||||||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
7751052 |
atttcaagttttttccacagcctttcatggaagtagtctctgaaat |
7751097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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