View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2110_low_3 (Length: 376)
Name: NF2110_low_3
Description: NF2110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2110_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 8879047 - 8879404
Alignment:
| Q |
1 |
caattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatataaaattg--agtcccaatcccaaacaaacaacaaggcatttg |
98 |
Q |
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| T |
8879047 |
caattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatataaaattgtgagtcccaatcccaaacaaacaacaagtcatttg |
8879146 |
T |
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| Q |
99 |
cacaatttgaacctaatccagtgttgattatttatgaatatataacttatataagaaccattgaacacctgaatattattacatataattaccaagaaag |
198 |
Q |
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| T |
8879147 |
cacaatttgaacctaatccagtgttgattatttatgaatat--aacttatataagaaccattgaacacctgaatattattacatataattaccaagaaag |
8879244 |
T |
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| Q |
199 |
taaaccaaaccaatgtaatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagtt |
298 |
Q |
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| T |
8879245 |
taaaccaaaccaatgtaatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagtt |
8879344 |
T |
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| Q |
299 |
cttcatcaaggtatgtagtaagcaaccatgattgagcatagctgttggagattgggatct |
358 |
Q |
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| T |
8879345 |
cttcatcaaggtatgtagtaagcaaccatgattgagcatagctgttggagattgggatct |
8879404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 8883059 - 8883203
Alignment:
| Q |
214 |
taatttctttagtttgtcaaaagagaacttccttccttaataagaacaaacacactgccaccatcaccccttgcgacgcgtagttcttcatcaaggtatg |
313 |
Q |
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| T |
8883059 |
taatttctttagtttgtcaaaagagaacttccttccttgataagaacaaacacactgccaccatcgccccttgagatacgtagttcttcatcaaggtatg |
8883158 |
T |
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| Q |
314 |
tagtaagcaaccatgattgagcatagctgttggagattgggatct |
358 |
Q |
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| T |
8883159 |
tagtaagcaaccatgattgagcgttgtcgttggaaattgggatct |
8883203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 8882971 - 8883027
Alignment:
| Q |
84 |
acaacaaggcatttgcacaatttgaacctaatccagtgttgattatttatgaatata |
140 |
Q |
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| T |
8882971 |
acaacaagttatttgcacaatatgtatctaatccagtgttgcttatttatgaatata |
8883027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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