View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_high_17 (Length: 216)
Name: NF21110_high_17
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 31536911 - 31537096
Alignment:
| Q |
11 |
aagaatatacaagtcttgttgatgctaagaatgctggggttgtcaatttcaatggctgagcaaaaccatggctagatattacttttccaaaactaaggcc |
110 |
Q |
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| T |
31536911 |
aagaaaatacaagtcttgttgatgctaagaatgctggggttgtcaatttcaatggctgagcaaaaccatggctagatattatttttccaaaactaaggcc |
31537010 |
T |
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| Q |
111 |
attgtggaccaaatatgttgacttttcagataacttcatcaagagttgtcacattattgcatcataacttggatattgagaaaatg |
196 |
Q |
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| T |
31537011 |
attgtggaccaaatatgttgacttttcagataacttcatcaagagttgtcacattattgcatcataacttggatattgagaaaatg |
31537096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 55869591 - 55869442
Alignment:
| Q |
17 |
atacaagtcttgttgatgctaagaatgctggggttgtcaatttcaatggctgagcaaaaccatggctagatattacttttccaaaactaaggccattgtg |
116 |
Q |
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| T |
55869591 |
atacaaatcttgttgatgctaagaatgccggggtagtccatttcaatggctgggcaaaaccatggctagatatagcttttccgcagctaaaaccattgtg |
55869492 |
T |
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| Q |
117 |
gaccaaatatgttgacttttcagataacttcatcaagagttgtcacatta |
166 |
Q |
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| T |
55869491 |
gaccaagtatgttgacttttcagacaacttcatcgagagctgtcacatta |
55869442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 34674122 - 34674011
Alignment:
| Q |
38 |
agaatgctggggttgtcaatttcaatggctgagcaaaaccatggctagatattacttttccaaaactaaggccattgtggaccaaatatgttgacttttc |
137 |
Q |
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| T |
34674122 |
agaatgctggtgtcatccatttcaatggcagggcaaagccatggctagacatagcttttccagaactaaggtcattgtggacaaaatatgtcgacttctc |
34674023 |
T |
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| Q |
138 |
agataacttcat |
149 |
Q |
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| T |
34674022 |
agataagttcat |
34674011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 636770 - 636695
Alignment:
| Q |
74 |
aaccatggctagatattacttttccaaaactaaggccattgtggaccaaatatgttgacttttcagataacttcat |
149 |
Q |
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| T |
636770 |
aaccatgactaaacataacttttccagaactaaggtcatcgtggataaaatatgttgacttctcagataagttcat |
636695 |
T |
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