View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_high_18 (Length: 212)
Name: NF21110_high_18
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_high_18 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 21113529 - 21113634
Alignment:
| Q |
107 |
atggtagtctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacataataatcaacagattc |
206 |
Q |
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| T |
21113529 |
atggtagtctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacataataatcaacagattc |
21113628 |
T |
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| Q |
207 |
caaaaa |
212 |
Q |
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||||| |
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| T |
21113629 |
aaaaaa |
21113634 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 21123301 - 21123367
Alignment:
| Q |
114 |
tctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcg |
180 |
Q |
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| T |
21123301 |
tctccaaaacctctttgcctctttttttgttcttcattttattttctgtctcatatgcaacttctcg |
21123367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 21143221 - 21143297
Alignment:
| Q |
114 |
tctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacat |
190 |
Q |
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| T |
21143221 |
tctctaaaacctctctatctcttttgttattgttcgttttgttttcttcttcatacgcaacttctcgcatcacacat |
21143297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 21149044 - 21149114
Alignment:
| Q |
120 |
aaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacat |
190 |
Q |
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| T |
21149044 |
aaacctccctgtctgttttgctattgttcattttattttcttccttgtatgcaacttcacgcatcacacat |
21149114 |
T |
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