View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_high_19 (Length: 205)
Name: NF21110_high_19
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 17196133 - 17196304
Alignment:
| Q |
21 |
cctgctgcttatcgaaatatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggcttcataatttgagtggaagtgaagtaataaatct |
120 |
Q |
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| T |
17196133 |
cctgctgcttatcgaaacatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggcttcataatttgagtggaagtgaagtaataaatct |
17196232 |
T |
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| Q |
121 |
tcatattacataagttttgcattgaacgtcgtacataaattgtttaggtttcttgttttttcaatattcttc |
192 |
Q |
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| T |
17196233 |
tcatattacataagttttgcattgaacgtcttacataaactgtttaggtttcttgtttttgcaatattcttc |
17196304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 17184273 - 17184100
Alignment:
| Q |
21 |
cctgctgcttatcgaaatatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggcttcataatttgagtggaagtgaagtaata----a |
116 |
Q |
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| T |
17184273 |
cctgctgcttatcgaaacatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggctt--taatttgagtggaagtgaagtaatagttaa |
17184176 |
T |
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| Q |
117 |
atcttcatattacataagttttgcattgaacgtcgtacataaattgtttaggtttcttgttttttcaatattcttc |
192 |
Q |
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| T |
17184175 |
atcttcatattacataagttttgcattgaacgtcttacataaactgtttaggtttcttgtttttgcaatattcttc |
17184100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 17193356 - 17193453
Alignment:
| Q |
72 |
aacttatatgttggcttcataatttgagtggaagtgaagtaa----taaatcttcatattacataagttttgcattgaacgtcgtacataaattgttt |
165 |
Q |
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| T |
17193356 |
aacttatatgttggcttcataatttgagtggaagtgaagtaataattaaatcttcatattacataagttttgcattaaacgtcttacataaattgttt |
17193453 |
T |
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