View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_high_3 (Length: 548)
Name: NF21110_high_3
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Complemental strand, 25432147 - 25431626
Alignment:
| Q |
16 |
cttcttgcaaatgatttataatgggtgcccaccgtcgatatgaaggtctatcatattaccatcctatttctaaactgttaatcattgttgtcagtttctt |
115 |
Q |
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| T |
25432147 |
cttcttgcaaatgatttataacgggtgcccaccgtcgatatgaaagtctatcatattaccatcctatttctaaactgttaatcattgttgtcagtttctt |
25432048 |
T |
|
| Q |
116 |
caattcccatatcattgttaccagttagcataagaccatctacatatacgcatatgatcagtaaacatgtttcgtctcttccttttcacataaacaccac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25432047 |
caattcccatatcattgttaccagttagcataagaccatctacatatacgcatatgatcagtaaacatgtttcgtctcctccttttcacataaacaccac |
25431948 |
T |
|
| Q |
216 |
gcctattaagatatttgattgaattctcattccataaatactctttccattcnnnnnnncatgccctaggtgcttgctttaagtcatataaagcatttgt |
315 |
Q |
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||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
25431947 |
gcccatcaagatatttgattgaattcttattccataaatactctttcctttctttttttcatgccctaggtgcttgcttcaagccatataaagcctttgt |
25431848 |
T |
|
| Q |
316 |
ttagcttgtagactttatcctttttacatctgatactaaatccaagcggttgtttgataaacacaatttcttcaagaaaaccgttcagaaaagttgattt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
25431847 |
ttagcttgtagactttatcctttttacatctgatactaaatacaagcggttgtttgataaacacaatttcttcaagaagaccgtttagaaaagttgattt |
25431748 |
T |
|
| Q |
416 |
cacatctaaatgatacaaaggctaggctttgctagtcgctactacaatgactagcctgatagtttcatgacttgcaactaccgataatacttgattattc |
515 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
25431747 |
cacatctaaatgatacaaaggctaggatttgctagttgctactacaatgactagcctgatagtttcatgacttgcaactacccataatacttcattattc |
25431648 |
T |
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| Q |
516 |
atagccttcactttgtaagaat |
537 |
Q |
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|||||||||||||||||||||| |
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| T |
25431647 |
atagccttcactttgtaagaat |
25431626 |
T |
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