View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_high_8 (Length: 366)
Name: NF21110_high_8
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 5478846 - 5479072
Alignment:
| Q |
10 |
aagaatatgaaaccttaaatgaaacattttagtttctgcgtccttgtaatattttaagggtaaatgcttcctttgttagttgtccttgaggcttttagtt |
109 |
Q |
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| T |
5478846 |
aagaaaatgaaaccttaaatgaaacattttagtttccgcgtccttgtaatat-------------gcttcctttgttagttgtccttgaggcttttagtt |
5478932 |
T |
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| Q |
110 |
tgtctttagttagcccttttttcatcaaaactaaaaaataaacattccaaatattaatgtagattataatcttaaataaattaaacattttaacacaacc |
209 |
Q |
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| T |
5478933 |
tgtctttagttagcccttttttcatgaaaactaaaaaataaacattccaaatattaatgtagattatattcttaaataaattaaacattttaacacaacc |
5479032 |
T |
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| Q |
210 |
ttcgaagtttttatccagcttccaatcataaaatccagaa |
249 |
Q |
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| T |
5479033 |
ttggaagtttttatccagcttccgatcataaaatccagaa |
5479072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 11677369 - 11677281
Alignment:
| Q |
249 |
acatacatggttgacagattcaacaacaaactttctctgaagcttttgccattgacgagagagaatattggtgtttcgtctttgaagggag |
339 |
Q |
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| T |
11677369 |
acatacatggttgactgattcaacaacaaactttctctaatgcttctgccattgac--gggagaatattgatgttttgtctttgaagggag |
11677281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 8406799 - 8406920
Alignment:
| Q |
92 |
tccttgaggcttttagtttgtctttagtta-------gccctttttt-catcaaaactaaaaaataaacattccaaatattaatgtagattataatctta |
183 |
Q |
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| T |
8406799 |
tcctagaggcttttagtttgtctttagttattgcatagccctttttttcaaccaaaccaaaaa-taaatattccaaaaattaatgtt-attatattcttt |
8406896 |
T |
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| Q |
184 |
aataaattaaacattttaacacaa |
207 |
Q |
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| T |
8406897 |
aataaatgaaacattttaacacaa |
8406920 |
T |
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