View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21110_low_1 (Length: 732)

Name: NF21110_low_1
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21110_low_1
NF21110_low_1
[»] chr2 (1 HSPs)
chr2 (11-669)||(15907008-15907665)


Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 11 - 669
Target Start/End: Original strand, 15907008 - 15907665
Alignment:
Q  11 aagaatatgaatacacaatgggatgtgattggacatataactaaaatannnnnnnnagtgtgattgcatatcattaaactcataaactaaagcatatgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  15907008 aagaatatgaatacacaatgggatgtgattggacatataactaaaatattttttttagtgtgattgcatatcattaaactcataaactaaagcatatgtt 15907107  T
Q  111 acaaatacaaaatatattcatattataataacatatccnnnnnnnnnnnnnacacacaaaatcattcattcagactctcataaacatatacagacacatt 210  Q
    ||||||||||||||||||||||||||||||||||||||             | |||||||||||||||||||||||||||||||||||||||||||||||    
T  15907108 acaaatacaaaatatattcatattataataacatatccctctctctctctca-acacaaaatcattcattcagactctcataaacatatacagacacatt 15907206  T
Q  211 gctactccagcttttgccttgcctccttccttcacagcctgtcaaacctaaattattacctcaacaacatgattaatattccagtttttatataaaaaat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15907207 gctactccagcttttgccttgcctccttccttcacagcctgtcaaacctaaattattacctcaacaacatgattaatattccagtttttatataaaaaat 15907306  T
Q  311 tgttcacctggttgctttgttgatgtttcaaacctaaagaatatgaactgccaagtgtcttcatgctgtctatgacctatctccaaattcttcagtgctt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15907307 tgttcacctggttgctttgttgatgtttcaaacctaaagaatatgaactgccaagtgtcttcatgctgtctatgacctatctccaaattcttcagtactt 15907406  T
Q  411 ggattcatccgtccnnnnnnnnnnnnnnnnnccaaccatgattcaaggaaaaccataaagatattaatcatccacttgtgttatattagtattggtttaa 510  Q
    ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15907407 ggattcatccgtccttttatttttattttttccaaccatgattcaaggaaaaccataaagatattaatcatccacttgtgttatattagtattggtttaa 15907506  T
Q  511 tagtattaaactttatggataaaaatgttggcatgagtgaagaacatgttcaatgaacttcttcaaacaaagcttcaattttgctacttcttgcaacagg 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  15907507 tagtattaaactttatggataaaaatgttggcatgagtgaagaacatgttcaatgaacttcttcaaacaaagctgcaattttgctacttcttacaacagg 15907606  T
Q  611 tgatcttttacatcaactttaaagcatatatatcttttcttaatcataattcataaccc 669  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15907607 tgatcttttacatcaactttaaagcatatatatcttttcctaatcataattcataaccc 15907665  T

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