View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_10 (Length: 397)
Name: NF21110_low_10
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 2878933 - 2878564
Alignment:
| Q |
18 |
atgtgtgtgaagtagtttgtgtcaatcaaagaaggtgaaaaatcatcacctgctggccaatatgctgatctaacaccatggtttaaaaattggtattgcg |
117 |
Q |
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| T |
2878933 |
atgtgtgtgaagtagtttgtgtcaatcaaagaaggtgaaaaatcatcacctgctggccaatatgctgatctaacaccatggtttaaaaattggtattgcg |
2878834 |
T |
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| Q |
118 |
aattattagaagatgatgatgatgatacattgaagaaaatggtcactagaaaaaccaaaattggtgttattatgattttttggacggccatggtttgtga |
217 |
Q |
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| T |
2878833 |
aattattagaagaagatgatgatgatacattgaagaaaatggtcactagaaaaactaaaattggtgttattatgattttttggacggccatggtttgtga |
2878734 |
T |
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| Q |
218 |
tcatataagatatgaatgaatttgtatgtgaatata----tatagtgaacaagtggttacaaataatagttattttatgtgattggtgatgttggaaatt |
313 |
Q |
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| T |
2878733 |
tcatataagatatgattgaatttgtatgtgaatatatatatatagtgaacaagtggttacaaatattagttattttatgtgattggtgatgttggaaatt |
2878634 |
T |
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| Q |
314 |
ggaatattatgattgaattgttgtgaattgaacggttcaactatgatgagggataagtgatggagagaaa |
383 |
Q |
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| T |
2878633 |
ggaatattatgattgaattgttgtgaattgaacggttcaactatgatgagggataagtgatggagagaaa |
2878564 |
T |
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