View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_12 (Length: 308)
Name: NF21110_low_12
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 100 - 291
Target Start/End: Original strand, 19133611 - 19133799
Alignment:
| Q |
100 |
gtatctcccaatgatattttatctcaattcttaataaattcaaatctaaatatatctagacataatattttgatccctcccagttctttttggccagctt |
199 |
Q |
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| T |
19133611 |
gtatatcccaatgatattttatctcaattcttagtagattcatatctaaatatatctagacataatattttgaaccctcctagttctt---ggccagctt |
19133707 |
T |
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| Q |
200 |
caatacctagctagagttcaaggtattaaccatcgcatttattttggcagttcggtggttcttcaccttcgttaaaaagaaaggcacttttt |
291 |
Q |
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| T |
19133708 |
caacacctagctagggttcaaggtattaaccatcgcatttattttggcagttcggtggttcttcaccttcgttaaaaagaaaggcacttttt |
19133799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 98 - 291
Target Start/End: Complemental strand, 28402734 - 28402545
Alignment:
| Q |
98 |
tagtatctcccaatgatattttatctcaattcttaataaattcaaatctaaatatatctagacataatattttgatccctcccagttctttttggccagc |
197 |
Q |
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| T |
28402734 |
tagtatctcccaatgatattttatctcgattcataataaattaaaatctaaatatacctagacataatattttgaaccctcccagttctttatggccagc |
28402635 |
T |
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| Q |
198 |
ttcaatacctagctagagttcaaggtattaaccatcgcatttattttggcagttcggtggttcttcaccttcgttaaaaagaaaggcacttttt |
291 |
Q |
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| T |
28402634 |
ttcaatac----cttgggttcaaggtattaaccatcacgtttattttagcagttcggtggttcttcaccttcgttaaaaagaaaggcacttttt |
28402545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 291
Target Start/End: Complemental strand, 19931635 - 19931504
Alignment:
| Q |
156 |
tagacataatattttgatccctcccagttctttttggccagcttcaatacctagctagagttcaaggtattaaccatcgcatttattttggcagttcggt |
255 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19931635 |
tagacataatattttgaaccctcccagttctttttggccagcttcaataccttgg----gttcaaggtattaaccatcgcatttattttggcagttcggt |
19931540 |
T |
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| Q |
256 |
ggttcttcaccttcgttaaaaagaaaggcacttttt |
291 |
Q |
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| T |
19931539 |
ggttcttcaccttcgttaaaaagaaaggcacttttt |
19931504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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