View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_13 (Length: 301)
Name: NF21110_low_13
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 42006185 - 42006485
Alignment:
| Q |
1 |
atgaaggtgagcttggatgatgatagacatgattactattcattgggaacttatgatgagaagaaggttaagttcacagcagatgatttgaaaaatgatg |
100 |
Q |
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| T |
42006185 |
atgaaggtgagcttggatgatgatagacatgattactattcattgggaaattatgatgagaagaaggttaagttcacagcagatgatttgaaaaatgatg |
42006284 |
T |
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| Q |
101 |
ttggtattggacttaggtatgattatggtatattctatgcttccaagacattttatgatcagaaaaaggataggagagttttgtggggttggattggaga |
200 |
Q |
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| T |
42006285 |
ttggtattggacttaggtatgattatggtatattctatgcttccaagacattttatgatcagaaaaaggataggagagttttgtggggttggattggaga |
42006384 |
T |
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| Q |
201 |
atctgatagcgaatatgctgatgtcgccaagggttgggcttcagttcaggtataccggatctatctcattttaatttatttttgtccgcctaaaatattt |
300 |
Q |
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| T |
42006385 |
atctgatagcgaatatgctgatgtcgccaaaggttgggcttcagttcaggtataccggatctatctcattttaatttatttttttccgcctaaaatattt |
42006484 |
T |
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| Q |
301 |
t |
301 |
Q |
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| T |
42006485 |
t |
42006485 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 42591050 - 42591103
Alignment:
| Q |
108 |
tggacttaggtatgattatggtatattctatgcttccaagacattttatgatca |
161 |
Q |
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| T |
42591050 |
tggacttagatatgactatggtaatttctatgcttccaagtcattttttgatca |
42591103 |
T |
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