View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_14 (Length: 298)
Name: NF21110_low_14
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 3959756 - 3959498
Alignment:
| Q |
26 |
taaatgatatgaaacaaatttatacgtggggcaatattacttgtgtacattacacaaacttatatctgaatcaaataacaagaatagatccaaaacactc |
125 |
Q |
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| T |
3959756 |
taaatgatatgaaacaaatttatacgtggggcaatattacttgtgtacattacacaaacttatatctgaatcaaataacaagaatagatccaaaacactc |
3959657 |
T |
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| Q |
126 |
ttctgatctgagtactatgcgatggattggagtggaccacttttattcaagattatcgtacgtgttttatttgtattggtccccagttgtacgagggaaa |
225 |
Q |
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| T |
3959656 |
ttctgatctgagtactacgcgatggattggagtggaccacttttattcaagattat----cgtgttttatttgtattggtccccagttgtacgagggaaa |
3959561 |
T |
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| Q |
226 |
cactatttgaaaagtgagttaattttgtttgattcaattcaatgccaatgagtttttgaattt |
288 |
Q |
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| T |
3959560 |
cactatttgaaaagtgagttaattttgtttgattcaattcaatgccaatgagtttttgaattt |
3959498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 3960323 - 3960418
Alignment:
| Q |
26 |
taaatgatatgaaacaaatttatacgtggggcaatattacttgtgtacattacacaaacttatatctgaatcaaataacaagaatagatccaaaac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
3960323 |
taaatgatatgaaacaaatttatacgtggggcaatattacttgtgtacattacacaaatttatatctgaattaaataacaagaatagatccaaaac |
3960418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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