View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21110_low_16 (Length: 281)
Name: NF21110_low_16
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21110_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 36748616 - 36748868
Alignment:
| Q |
7 |
tccaagaatatcttgtgagcaaattccattttctaatgatgtctttgcatatccattacttttcacatccattgaacttgaatctgttttcttcttttct |
106 |
Q |
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| T |
36748616 |
tccaacaatctcttgtgagcaaattccattttctgatgatgtctttgcatatccattacttttcacatccattgaacttgaacctgttttcttcttttct |
36748715 |
T |
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| Q |
107 |
ccaaaaccatacagaacaaacacaaatgccaaactacaagccagaatccctccaagaatatactgataatccatctcaaagaacttttttattagaacaa |
206 |
Q |
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| T |
36748716 |
ccaaaaccatacacaacaaacacaaatgccaaactacaagccagaatccctccaagaatatactgataatccatctcaaagaacttttttattagaacaa |
36748815 |
T |
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| Q |
207 |
taagatcaatgaaatgagaaaactagtttttctaatttctttgtttacttttt |
259 |
Q |
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| T |
36748816 |
taagatcaatgaaatgagaaaactagtttttctaatttctttgtttacttttt |
36748868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 12253325 - 12253388
Alignment:
| Q |
123 |
caaacacaaatgccaaactacaagccagaatc---cctccaagaatatactgataatccatctc |
183 |
Q |
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| T |
12253325 |
caaacacaaatgccaagctacaagcaagaatctctcctccaagaatatattgataatccatctc |
12253388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 12400003 - 12399936
Alignment:
| Q |
119 |
agaacaaacacaaatgccaaactacaagccagaatc---cctccaagaatatactgataatccatctc |
183 |
Q |
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| T |
12400003 |
agaacatacacaaatgcaaaactacaagcaagaaactctcctccaagaatatattgataattcatctc |
12399936 |
T |
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