View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21110_low_17 (Length: 275)

Name: NF21110_low_17
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21110_low_17
NF21110_low_17
[»] chr8 (1 HSPs)
chr8 (16-258)||(43615158-43615401)
[»] chr7 (3 HSPs)
chr7 (13-47)||(46963229-46963263)
chr7 (16-47)||(26403414-26403445)
chr7 (16-47)||(48643533-48643564)
[»] chr6 (2 HSPs)
chr6 (16-47)||(21862477-21862508)
chr6 (16-47)||(33424148-33424179)
[»] chr4 (1 HSPs)
chr4 (16-47)||(16871563-16871594)
[»] chr2 (1 HSPs)
chr2 (16-47)||(8986839-8986870)
[»] chr3 (1 HSPs)
chr3 (16-46)||(814555-814585)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 43615401 - 43615158
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttca-----------tgttgaaagttggatatgctccaagtacatgcacaccttttatatgtttgacattg 104  Q
    |||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615401 atacgaaaaacatactaaataatataaagttcaaacaatggtcatgttcaaagttggatatgctccaagtacatgcacaccttttatatgtttgacattg 43615302  T
Q  105 aaagatttgtatagaggatcaagttttgctttgaagttgcgatttaccaatatagttttatgtttttgttttgttgttgattacgggcttaagattctta 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||          |||||||||||||||||||||||| ||||||||||||||||    
T  43615301 aaagatttgtatagaggatcaagttttgctttgaagttgtgatttacca----------atgtttttgttttgttgttgattatgggcttaagattctta 43615212  T
Q  205 tcaagtcttattcaaatttcttgtctaaaataattcatttaatatcaacatagt 258  Q
    |||||  |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  43615211 tcaagaattatccaaattttttgtctaaaataattcatttaatatcaacatagt 43615158  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 46963229 - 46963263
Alignment:
Q  13 aatatacgaaaaacatactaaataatataaagttc 47  Q
    |||||||||||||||||||||||||||||||||||    
T  46963229 aatatacgaaaaacatactaaataatataaagttc 46963263  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 26403445 - 26403414
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttc 47  Q
    ||||||||||||||||||||||||||||||||    
T  26403445 atacgaaaaacatactaaataatataaagttc 26403414  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 48643564 - 48643533
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttc 47  Q
    ||||||||||||||||||||||||||||||||    
T  48643564 atacgaaaaacatactaaataatataaagttc 48643533  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 21862508 - 21862477
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttc 47  Q
    ||||||||||||||||||||||||||||||||    
T  21862508 atacgaaaaacatactaaataatataaagttc 21862477  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 33424148 - 33424179
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttc 47  Q
    ||||||||||||||||||||||||||||||||    
T  33424148 atacgaaaaacatactaaataatataaagttc 33424179  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 16871594 - 16871563
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttc 47  Q
    ||||||||||||||||||||||||||||||||    
T  16871594 atacgaaaaacatactaaataatataaagttc 16871563  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 8986870 - 8986839
Alignment:
Q  16 atacgaaaaacatactaaataatataaagttc 47  Q
    ||||||||||||||||||||||||||||||||    
T  8986870 atacgaaaaacatactaaataatataaagttc 8986839  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 814555 - 814585
Alignment:
Q  16 atacgaaaaacatactaaataatataaagtt 46  Q
    |||||||||||||||||||||||||||||||    
T  814555 atacgaaaaacatactaaataatataaagtt 814585  T

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