View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21110_low_2 (Length: 682)

Name: NF21110_low_2
Description: NF21110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21110_low_2
NF21110_low_2
[»] chr2 (2 HSPs)
chr2 (10-612)||(39168866-39169476)
chr2 (14-236)||(17160793-17161017)
[»] chr7 (5 HSPs)
chr7 (10-571)||(42469323-42469893)
chr7 (10-192)||(28426921-28427104)
chr7 (324-404)||(34929048-34929128)
chr7 (288-333)||(34928605-34928650)
chr7 (148-232)||(34928513-34928596)
[»] chr8 (2 HSPs)
chr8 (10-192)||(6931782-6931964)
chr8 (258-615)||(12608829-12609198)
[»] chr6 (1 HSPs)
chr6 (13-270)||(30026063-30026317)
[»] chr1 (2 HSPs)
chr1 (138-236)||(34340144-34340241)
chr1 (55-114)||(34339880-34339939)


Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 10 - 612
Target Start/End: Complemental strand, 39169476 - 39168866
Alignment:
Q  10 aagaaaatgaggagccgaattaatct-attaataatgttggtgggaagtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttg 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  39169476 aagaaaatgaggagccgaattaatcttattaataatgttggtgggaagtatggaatataggcgagaaagtttccgatcatttccatcaacaaggtccttg 39169377  T
Q  109 atactctagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaatggctataccaaaaaactagagttaccatcc 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  39169376 atactccagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaagggctatacca-aaaactagagttaccatcc 39169278  T
Q  209 cccaatttgaattgaaacccatctttaaggtgctcaatagttttgacaatagagttccaaataggagacccctttcgactagtaacatttaagaccaaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  39169277 cccaatttgaattgaaacccatctttaaggtgctcaatagttttgacaatagagttccaagtaggagacccctttctactagtaacatttaagaccaaat 39169178  T
Q  309 tttcccccaagtaaatatctttaagcatcttgacccataacttatctttagagttaagaatatcccacaccaacttgccaaggagagccacattctggaa 408  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169177 ttt-ccccaagtaaatatctttaagcatcttgacccataatttatcttcaaagttaagaatatcccacaccaacttgccaaggagagccacattctggaa 39169079  T
Q  409 tctagcaatgtgaataccaagaccacctaatttcttgtggcgagtcattttatctcagctaaccaaatgaata---------tatgatcccttccaaaca 499  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||| || |||||||||||||||         | | | ||||||||||||    
T  39169078 tctagcaatgcgaataccaaggccacctaatttcttgtggtgagtcattttatcccaactaaccaaatgaataccattgtcctctaaccccttccaaaca 39168979  T
Q  500 aatctacaagcaactttgtcaagataatcataaatagattgaggataccactgaatttgcatcccatacgaaggtatagagttaataaccgcagtagcaa 599  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |||||||    
T  39168978 aatctacaagcaactttatcaagataatcacaaacagattgaggataccactggatttacatcccatacgaagctatagagttaataaccgcggtagcaa 39168879  T
Q  600 gaactaaacgacc 612  Q
    |||||||||||||    
T  39168878 gaactaaacgacc 39168866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 17161017 - 17160793
Alignment:
Q  14 aaatgaggagccgaattaatct-attaataatgttggtgggaagtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttgatac 112  Q
    |||||||||||| ||||||||| ||||||||||  ||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  17161017 aaatgaggagccaaattaatcttattaataatgccggtggtaagtatggaatataggcgataaagtttccaatcatttccatcaacaacatccttgatac 17160918  T
Q  113 tctagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtc-tagcc-aatggctataccaaaaaactagagttaccatcccc 210  Q
    || || ||||| |||| |||||||| ||||||||||||||||| ||||||||||| || | ||| || |||||| || ||||| ||||||||||||||||    
T  17160917 tccagctcataacatggtagtgaacgtaaggcacatgagtacatagaggttccttatctttgcctaagggctat-cccaaaaattagagttaccatcccc 17160819  T
Q  211 caatttgaattgaaacccatctttaa 236  Q
    ||||||||||||||||||||||||||    
T  17160818 caatttgaattgaaacccatctttaa 17160793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 10 - 571
Target Start/End: Complemental strand, 42469893 - 42469323
Alignment:
Q  10 aagaaaatgaggagccgaattaatct-attaataatgttggtgggaagtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttg 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||| ||||||    
T  42469893 aagaaaatgaggagccgaattaatcttattaataatgttggtgggaagtatggaatattagcgagaaagttttcaatcattcccatcaacaaggtccttg 42469794  T
Q  109 atactctagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaatggctataccaaaaaactagagttaccatcc 208  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  42469793 atactccagttcatatcatgatagtgaacataaggcacataagtgcaaagaggttccttgtctagtcaagggctatatcaaaaa-ctagagttaccatcc 42469695  T
Q  209 cccaatttgaattgaaacccatctttaaggtgctcaatagttttgacaatagagttccaaataggagacccctttcgactagtaacatttaagaccaaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  42469694 cccaatttgaattgaaacccatctttaaggtgctcaatagttttgacaatagagttccaagtaggagacccctttctactagtaacatttaagaccaaat 42469595  T
Q  309 tttcccccaagtaaatatctttaagcatcttgacccataacttatctttagagttaagaatatcccacaccaacttgccaaggagagccacattctggaa 408  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42469594 tttcccccaagtaaatatctttaagcatcttgacccataatttatcttcagagttaagaatatctcacaccaacttgccaaggagagccacattctggaa 42469495  T
Q  409 tctagcaatgtgaataccaagaccacctaatttcttgtggcgagtcattttatctcagctaaccaaatgaata---------tatgatcccttccaaaca 499  Q
    |||||||||| |||||||||  ||||||||||||||||||||| |||||||||| || |||||||||||||||         | ||| ||||||||||||    
T  42469494 tctagcaatgcgaataccaatgccacctaatttcttgtggcgactcattttatcccaactaaccaaatgaatacctttgtcctctgaccccttccaaaca 42469395  T
Q  500 aatctacaagcaactttgtcaagataatcataaatagattgaggataccactgaatttgcatcccatacgaa 571  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42469394 aatctacaagcaactttgtcaaaataatcacaaatagattgaggataccactggatttgcatcccatacgaa 42469323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 28427104 - 28426921
Alignment:
Q  10 aagaaaatgaggagccgaattaatct-attaataatgttggtgggaagtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttg 108  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28427104 aagaaaatgaggagccaaattaatcttattaataatgttggtgggaagtattgaatataggcgagaaagtttccaatcattcccatcaacaaggtccttg 28427005  T
Q  109 atactctagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaatggctataccaaaaa 192  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||||||    
T  28427004 atactccagttcatatcatgatagtgaacataaggcacatgagtgcaaatatgtttcttgtctagccaagggctataccaaaaa 28426921  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 34929048 - 34929128
Alignment:
Q  324 tatctttaagcatcttgacccataacttatctttagagttaagaatatcccacaccaacttgccaaggagagccacattct 404  Q
    ||||||||| |||| |||||||||| ||| ||| | | || |||||||| |||||||||||||||||||||||||||||||    
T  34929048 tatctttaaacatcgtgacccataatttaacttcataattgagaatatcacacaccaacttgccaaggagagccacattct 34929128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 34928605 - 34928650
Alignment:
Q  288 tagtaacatttaagaccaaattttcccccaagtaaatatctttaag 333  Q
    ||||| ||||||||||||||||| || | |||||||||||||||||    
T  34928605 tagtagcatttaagaccaaatttccctctaagtaaatatctttaag 34928650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 34928513 - 34928596
Alignment:
Q  148 tgagtacaaagaggttccttgtctagccaatggctataccaaaaaactagagttaccatcccccaatttgaattgaaacccatct 232  Q
    ||||| ||||||| |||||||| ||  ||| || ||||||||||| ||| || || |||||| |||||||||||||||| |||||    
T  34928513 tgagtgcaaagagattccttgtttaatcaagggttataccaaaaa-ctatagctatcatccctcaatttgaattgaaactcatct 34928596  T

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Target: chr8 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 6931782 - 6931964
Alignment:
Q  10 aagaaaatgaggagccgaattaatctattaataatgttggtgggaagtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttga 109  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  6931782 aagaaaatgaggagccgaattaatcttttaataatgttgatgggaagtatggaatataggcgagaaagtttccgatcattcccatcaacaaggtccttga 6931881  T
Q  110 tactctagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaatggctataccaaaaa 192  Q
    ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  6931882 tactccaattcatatcatgatagtgaacataaggcacatgagtgcaaagaggttccttgtctagccaagggctataccaaaaa 6931964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 258 - 615
Target Start/End: Original strand, 12608829 - 12609198
Alignment:
Q  258 tagagttccaaataggagacccctttcgactagtaacatttaagaccaaattttcccccaagtaaatatctttaagcatcttgacccataacttatcttt 357  Q
    |||||||| || ||||||| ||||||||| ||| | ||| |||||| |||  || ||| |||||| ||||||||||||  |||| |||||| ||||||||    
T  12608829 tagagttcgaagtaggagatccctttcgagtagcagcatgtaagacaaaaaatttccc-aagtaattatctttaagcactttgatccataatttatcttt 12608927  T
Q  358 agagttaagaatatcccacaccaacttgccaaggagagccacattctggaatctagcaatgtgaataccaagaccacctaatttcttgtggcgagtcatt 457  Q
    |  ||||||| |||||| ||| || ||| ||||||||| || ||| |||||| || |||| |||||| |||| ||||  ||| | ||||| ||||||| |    
T  12608928 aaggttaagagtatcccgcactaatttgtcaaggagagacatattttggaatataccaatatgaatatcaaggccacacaatctattgtgtcgagtcact 12609027  T
Q  458 ttatctcagctaaccaaatgaatatat-------------gatcccttccaaacaaatctacaagcaactttgtcaagataatcataaatagattgagga 544  Q
    |||||||| ||| |||||| ||| | |             || ||||| || |||||||||   |||||| |||||| |||||||||||||||||||| |    
T  12609028 ttatctcaactagccaaataaatcttttgtctttaattttgacccctttcacacaaatctaagtgcaactctgtcaaaataatcataaatagattgagaa 12609127  T
Q  545 taccactgaatttgcatcccatacgaaggtatagagttaataaccgcagtagcaagaactaaacgaccaaa 615  Q
    ||||| || ||||||||| | || ||||||||||||||||||||  || |||||||||| |||| ||||||    
T  12609128 taccattggatttgcatctcttaagaaggtatagagttaataacaacaatagcaagaaccaaactaccaaa 12609198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 30026317 - 30026063
Alignment:
Q  13 aaaatgaggagccgaattaatctattaataatgttggtgggaagtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttgatac 112  Q
    |||| ||| |||| |||||||||  ||||||| ||||||| ||| || |||||||||   |||||||  |||||||||||||||||| ||||||||||||    
T  30026317 aaaaagagcagccaaattaatct--taataatattggtggaaagcatagaatataggaaggaaagttgtcaatcattcccatcaacacgatccttgatac 30026220  T
Q  113 tctagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaatggctataccaaaaaactagagttaccatccccca 212  Q
    ||| |||||||||||| || | ||| |  | ||  |||||||||||||||||||| ||||| ||| || ||||||||||   | ||||||||||||||||    
T  30026219 tctggttcatatcatggtaataaacgtgcgacaagtgagtacaaagaggttccttatctagtcaagggttataccaaaat--tggagttaccatccccca 30026122  T
Q  213 atttgaattgaaacccatctttaaggtgctc-aatagttttgacaatagagttccaaat 270  Q
    |||||||||||||| ||| ||||| | |||| ||||||||| ||||||||||| |||||    
T  30026121 atttgaattgaaactcatatttaaagagctcaaatagttttaacaatagagtttcaaat 30026063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 34340144 - 34340241
Alignment:
Q  138 ataaggcacatgagtacaaagaggttccttgtctagccaatggctataccaaaaaactagagttaccatcccccaatttgaattgaaacccatctttaa 236  Q
    ||||||||||||| || | ||||||||||| ||||  ||| ||||||||| |||||||||| ||  ||| |||||| |||| ||||||| |||||||||    
T  34340144 ataaggcacatgactatagagaggttccttatctacacaaaggctatacc-aaaaactagaattgtcattccccaaattgagttgaaactcatctttaa 34340241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 34339880 - 34339939
Alignment:
Q  55 agtatggaatataggcgagaaagtttccaatcattcccatcaacaagatccttgatactc 114  Q
    ||||||||| ||||  ||||||| | ||||||||||| |||||| |||||||||||||||    
T  34339880 agtatggaacatagatgagaaagctgccaatcattcctatcaacgagatccttgatactc 34339939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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